KEGG   Etheostoma cragini (Arkansas darter): 117950023
Entry
117950023         CDS       T07493                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra03420  Nucleotide excision repair
ecra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117950023 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117950023 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ecra04121]
    117950023 (ddb1)
   03400 DNA repair and recombination proteins [BR:ecra03400]
    117950023 (ddb1)
Ubiquitin system [BR:ecra04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     117950023 (ddb1)
DNA repair and recombination proteins [BR:ecra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117950023 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117950023 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 117950023
NCBI-ProteinID: XP_034736569
LinkDB
Position
1:9674998..9733446
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLVQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTMEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQTRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtagtaacagctcagaaacctacggcagtcaatgcctgcatcaca
ggtcacttcacctctgctgaagacctcaatctgctcatagctaaaaacacacgcttggag
atctatgtggtgacagctgaggggctgaggcccgtcaaggaggtgggcatgtatggaaag
attgctgtcatggagctcttcaggccaaagggggagagcaaggacctgctgttcattctc
acatccaagtacaacgcctgcatcctagaatacaaacagaacggggagagcattgacatc
atcactcgtgcccacggcaatgtccaggatcgtatcgggcgaccatcggaaacaggcatt
attggaattgtagacccagaatgccgtatgattggcctgcggctgtatgacgggttgttc
aaggtgatcccattggaccgggacaaccgcgagctcaaggccttcaacatcagactggag
gagctgcaggttatcgatgttcacttcctgtatggctgccaggcaccaaccgtctgcttc
atctaccaggacccgcagggacgccatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaagcaggagaatgtggaagctgaggcatctatggtcatc
ccggtgccagagccatttggtggagctataatcataggacaagagtccatcacctaccac
aatggagataaatacttggccattgcaccacctactatcaagcaaagcaccatcgtctgt
cacaaccgggtggaccccaatggctctcgctacctgctgggggacatggagggacgtctg
tttatgctgctgttggagaaggaggagctcatggacggcacagtggcgctcaaagacttg
catgtggagctgctcggagagacgtccattgctgagtgtttgacctacttggacaatggt
gtggtctttgtgggctccagactgggcgactcccagttagtgaagctcaacgtggacagc
aatgaacagggctcgtatgtggctgtgatggagacgttcaccaacctggggcccatcgtg
gacatgtgtgtggtggacctggagaggcagggccagggccagctggtgacatgctctggt
gcgttcaaggagggctccctacggatcattcgcaacggcatcgggattcatgagcacgcc
agcattgaccttccgggaatcaaaggcttgtggccactccgctcagaggcaggccgagag
acagatgacatgctggtgctgtctttcgtgggacaaacaagagtgttgatgctgagtggt
gaggaagtcgaggagactgaacttcccggctttgtggacaaccagcagacattttactgt
ggcaacgtggcgcaccagcaactcgttcaaatcacgtcaggctctgtgcgcctggtgctc
caggagagcaaggcattagtgagtgaatggaaggagccacagggcaggaacatcagcgtg
gctgcctgtaaccacactcaggtggtgcttgctgtgggccgagccctctactacctgcag
atcctggctggagagctcaaacagatcagtaccatggagatggagcatgaggtggcctgc
ctggacatcacacctctgggggagggtggtggtgaatcaccgctctgtgctgtgggactc
tggactgacatctcagcccgtgtgctcaaactgccctgctttacagccctgcacaaggaa
atgctcggcggagagatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgcgttaggagacggagcgctcttctactttggtctggacctacagact
ggtgccctgagcgagcgtaagaaggtcacgctcggcactcagcccaccgtgctcaggacc
ttcaggtccctgtccacttccaacgtcttcgcctgctccgaccgacccactgtcatctac
tcttccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactatatgtgc
ccactcaactccgagggttatcccgacagtctggctctggccaacaacagcactctgacc
atcggtaccatcgacgagattcagaaactccacattcgaaccgttcccctctatgagtct
cccaggcggatctgttaccaagaggtttcccagtgtttcggggttctatccagcagggtg
gagattcaggatgtgagcggcaccacatctgctgtgcgccccagtgccagcactcaggct
ctctccagcagcgtaagctccagcaagctcttccccagcagcacctctccccatgagacc
tcctttggtgaagaggtagaggttcacagtctgctagtcgtggatcagcacacgtttgag
gtcctccatgcccatcagttcctccccagtgagtacgctttgagcatggtgtcatgtcgt
ctgggaaaagacccgtcggtgtatttcatcgtcggcaccgccatggtgtacccagaggag
gctgagcccaagcagggacgcatcattgtcttccactacactgacggtaagctgcaaacc
gtggctgagaaggaggtgaaaggagctgtctattctatggtggagttcaatggaaagctg
ctggccagcatcaacagcacagtccgtctgtacgagtggacggctgagaaggagctgagg
accgagtgtaaccactacaacaatatcatggctctttacctgaagaccaaaggagatttc
atcctggtgggagacctgatgaggtccgtcctgctgctggcgtacaaacccatggaggga
aactttgaagagattgcacgtgactttaaccctaactggatgagtgctgtggaaatcctg
gacgacgacaacttcctgggggccgagaatgccttcaatctgtttgtctgccagaaggac
agtgcggccaccaccgatgaggagcgtcagcacctgcaggaggtgggggtctttcacctt
ggggagtttgtaaatgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tctacgcccacccagggctctgtgctcttcggcacggttaacggcatgattggtctggta
acgtccctgtctgagggctggtacagcctcctcctggatctgcagacccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggagatccttccacacggagcgt
aagacagagcaagccacaggattcatcgacggggatctgatagagagcttcctggatctg
ggtcgagccaagatgcaggaggtcgtcagtactctacagatcgatgacggcagcggcatg
aaacgtgaagccacagtggacgaggtcattaagattgtggaggagctgacgaggatccac
taa

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