Etheostoma cragini (Arkansas darter): 117950077
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Entry
117950077 CDS
T07493
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117950077 (chd1l)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117950077 (chd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
LIG3_BRCT
AAA_22
SWI2_SNF2
AAA_34
Motif
Other DBs
NCBI-GeneID:
117950077
NCBI-ProteinID:
XP_034736670
LinkDB
All DBs
Position
9:23629057..23642171
Genome browser
AA seq
1027 aa
AA seq
DB search
MADILLKIKNTVAEKKKTAVAQSDLQKWGLRGIQLRPYQLDGVQWLTQCLENQQGCILGD
EMGLGKTCQTISLLVYMSGALGRKGPFLVLSPLSVMENWRKELECFAPSLTVLCYKGDKE
RRAELQRETHTQDFHLLLTTYELCLKDASFLRRWKWKILVVDEAHRLKNQNSLLHKTLTE
FSVGFRVLLTGTPIQNNLQELHSLLSFIQPSIFTADETDSFANSYANVQSQPALAAELQS
VLEPFLLRRVKSEVALDLPKKTELLVYHGMSALQKKYYKAILMKDLEAFGNEQGSKNRLL
NILMNLRKCVNHPYLFNGVEPEPFEMGEHLIEASGKLCLLDSMLTHLHKGGHRILLFSQM
TRMLDILQDYMEYRGYSYERLDGSVRGEERNLAVKNFSSKPIFVFLLSTKAGGVGLNLTA
ADTVIFMDSDFNPQNDLQAAARCHRIGQNRPVKVIRLLARDTVEEIMYSRAVSKLHLTST
VIEEGRFSLLDQAQSAAAGLQLSEILKFGVDKLLSSDESSVQDVKLEKILGPSRQGQWVD
EDFTSLKEKQNEEEDENGSESDGQNHMYYFEGKDYSKDPSSEDQMSFECLLEEQLAKFQR
AAGEGRALRHKAGLSLSVGLGMPTRKRKPLTEAELELRRRRREEASAKRAKIQEDLKKKQ
QEQKYKKKMAWWESCGYRSLCLPSVDREEEEEEEEVEEEEDDSSVCSTDSDSTGIHYILG
DVTHPHAAQADAIIVHCVDDSGRWGRGGLFTALEQRSDEPQKKYELAGKMQDLDLGNVLL
FPIDDKQSRLDGQDQLALIVAQQRDKANNLSGILLTALDEALKKIYTAAKRQKASVHLPR
IGHSTKGFNWYGTERLIRKHLASRGIPTFIYYHNRAAKNTAPPQTSTSVTLTSTSSPKPQ
LRNPHRLAEETEAESPGPPGPLQSSSRGPTQLPDFMRGVRVFFYNLPASERKRLARYLIT
YDGDEEEIMSPEVTHIVAVVENSFHSQELQDLVRQYTQPVPVQKAWLESCFSKQRKVNTA
LFLHLLR
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggcagacattttgttaaagataaaaaacaccgtggcagagaaaaagaagaccgccgta
gctcagagtgacttgcagaagtggggtttgagagggatccagctgagaccttaccagctg
gatggggtgcagtggctcacccagtgcctggagaaccagcagggatgcattttaggagac
gaaatgggtctggggaaaacctgtcagacaatctctctgctggtgtacatgtccggagct
ctcgggaggaaaggtccgtttttggtgctgagcccactctctgtcatggagaactggaga
aaggagttggaatgcttcgctccgtctctgactgtgctgtgttacaagggagacaaagag
agacgggctgagcttcagagggaaacacacacacaggacttccatcttctgctcactaca
tatgagctgtgtctcaaagatgcttcattcttgagacggtggaagtggaagattctcgtg
gtagacgaggctcacagactgaagaatcagaattcattattgcacaaaactttgacagag
ttttcagttggttttagagtccttctgacagggacccccatccagaacaacctgcaggag
ctccactctctgctgagcttcattcagcccagcatctttacagctgatgagacggacagc
tttgccaactcttacgccaatgtacagagtcaacctgctctcgctgctgagctgcaaagt
gtcctcgagcccttcttgcttcgtagagtcaagtcagaagtagctttagatctgccaaag
aagacggagctgctggtgtaccacggcatgtcggccctgcagaagaaatactacaaagcc
attctgatgaaggatctagaggcttttggaaatgaacagggcagcaagaaccggcttctg
aacatcttgatgaacctgaggaagtgtgttaaccacccatacctgtttaatggtgtggaa
ccagagccttttgagatgggggagcatctcattgaagccagtgggaaactttgccttttg
gacagcatgctgactcaccttcacaaagggggccatcggatcctgctgttctcccagatg
acgaggatgctggacatccttcaggattacatggagtacagaggttatagctatgaacgt
ctggatgggtccgtccgaggggaagaaagaaatctagcagtgaagaacttcagcagcaaa
cctatctttgtctttctactcagcaccaaagcaggaggagtgggcctgaacctcacagct
gctgacactgtcatttttatggacagtgacttcaaccctcaaaatgacctgcaggctgca
gcacgctgccatcggattggtcagaacaggcccgtgaaagtgatccgccttttggcaaga
gacactgttgaggaaataatgtattctcgtgctgtgtccaagttacacctcaccagcact
gttattgaagaaggacgcttctctttgctggaccaagctcagtcagccgctgctggactg
cagcttagtgagattttgaaatttggggtagacaagcttttgtcttcggacgaaagctct
gtacaggatgtgaaactggagaagatcctcggtccatcacgtcagggtcagtgggtggat
gaagacttcacctcgctcaaagaaaagcagaatgaggaggaggatgagaacggctctgaa
tctgacgggcagaaccacatgtactactttgaggggaaagactacagtaaggaccccagc
tctgaagaccagatgagctttgagtgtttgctggaggagcagctggccaaatttcagaga
gctgcaggagagggacgcgctctgcgacacaaagctggactctcactgtcggtgggcctc
gggatgccgacgaggaagaggaaacctcttactgaggctgagctggaactgaggcgccgg
agaagggaggaggcttcagccaagagagccaaaatccaggaggacctgaagaagaagcaa
caagagcagaaatacaagaaaaaaatggcgtggtgggagtcatgcggctacagatcactg
tgcttgccgtctgtggacagagaagaagaagaagaagaagaagaagtggaggaggaggag
gatgatagcagcgtatgctccacagactctgacagcacaggcatccattacattcttggg
gacgtcactcatcctcacgccgctcaggcagacgctatcatcgtccactgtgttgatgac
tcaggccggtggggcaggggaggcctgtttaccgctctagagcagcgatcagatgaacca
caaaagaagtatgagttggccggcaagatgcaagatttggaccttggaaatgtgctgctc
ttccccatcgatgacaaacagtccagattagacggccaggatcaattagccctaatcgtg
gcacagcaaagagacaaagcaaacaacttgtctgggatccttctaactgctctggacgaa
gctctgaagaagatttacactgcagccaagagacaaaaggcgagtgtacatcttcctcgc
atcggccactccaccaaaggtttcaactggtacggcacagagaggctcatcagaaaacac
ttggcttcaagaggcatccccacattcatatactatcacaacagagcagcaaagaacaca
gctccacctcagacatccacctctgtgaccttaacgtcaacatcctcccccaaaccacag
ttgcgtaacccccataggctggctgaggagacggaagcagaaagcccaggcccccccggt
cctctccagagctcgagccgcggccccacccagctccccgattttatgaggggagtgcgt
gtgtttttctacaacctgcctgcatcagagaggaagaggctggcccgctaccttatcact
tatgatggagatgaggaggagatcatgagtccggaggtcacccacatagttgcagtggtg
gagaacagctttcactcacaggagctccaggatctggtgcgtcagtacacccagcctgtc
cctgtgcagaaggcctggctagagtcctgcttctccaagcaacggaaagtcaacaccgcc
ctgttcctacatctgctccgataa
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