Etheostoma cragini (Arkansas darter): 117950325
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Entry
117950325 CDS
T07493
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117950325 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
117950325 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117950325 (lsm4)
03041 Spliceosome [BR:
ecra03041
]
117950325 (lsm4)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117950325 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
117950325 (lsm4)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117950325 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117950325
NCBI-ProteinID:
XP_034737154
LinkDB
All DBs
Position
9:8937692..8941322
Genome browser
AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGTQQNKQQGKGRGGAGRGLFGGRGRGMTG
PGRGQQQQQQLQQQDKKPGKPQGMKNQH
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactgtctctgctgaagactgcccagaaccatcctatgctggtggagctgaag
aacggagagacatacaatggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgtacctcgagggatggagacaagttctggaggatgcccgagtgctac
atcagaggaagcaccatcaaatacctgcgaatcccagacgagatcattgacatggtgaag
gaggaggtggtgtcgaaggggcgtggacgtggaggcacccagcagaacaaacagcagggc
aaaggcagaggaggagccggccgtggtctgtttggcggtcggggcagaggaatgactggt
cctggtcggggccagcagcagcagcagcagctgcagcagcaggataagaaaccaggcaaa
ccacagggaatgaagaaccagcactaa
DBGET
integrated database retrieval system
