Etheostoma cragini (Arkansas darter): 117950591
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Entry
117950591 CDS
T07493
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03320
PPAR signaling pathway
ecra04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
117950591 (rxrgb)
03320 PPAR signaling pathway
117950591 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117950591 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ecra03310
]
117950591 (rxrgb)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
117950591 (rxrgb)
Nuclear receptors [BR:
ecra03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
117950591 (rxrgb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
117950591
NCBI-ProteinID:
XP_034737633
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Position
9:complement(16739836..16771903)
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AA seq
474 aa
AA seq
DB search
MRWDAEQHPTLGNRRNNSHSMDSNDPYLHLNSGPMTHTHSPPMGGMVGHPSVISTSRPLM
SPMSGLGSPMNGLASPYPVITSSLGSPSISLPSTPNMNFGTLGSPQMNMNSVSSSEDIKP
PPGLQNLGNINYQCTSPGGMSKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT
CRDMKECLIDKRQRNRCQYCRYQKCLAMGMKREGVCAAVQEERQRGRERGENEVESTSSF
NEEMPVDKILDAELAVEPKTETSYNDGSPSNSTNDPVTNICQAADKQLFTLVEWAKRIPH
FSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDR
VLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSSPPEVEALREKVYASLESYTKQKY
PDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgggatgcggagcagcacccgactctaggaaatcgacgcaacaactcgcacagt
atggacagtaatgatccgtatttacacctcaactcggggccaatgacccacacccactct
cctcccatgggtggcatggtcggccacccgtcagtcatcagcacctcaaggcccttaatg
tcccccatgtctggcttgggctcgccaatgaacggcctggcctcaccctacccagtcatt
acatcttctctgggctcgccctctatatcattgccatccacgcccaacatgaactttgga
acactcggcagtccacagatgaacatgaacagtgttagcagctcggaggacatcaagcct
ccgccgggcctacagaacctgggaaacatcaactaccagtgtacgagccccgggggaatg
tcaaagcacatctgctccatttgcggggaccgctcctcaggaaagcactacggtgtgtac
agctgtgagggatgcaaaggcttctttaagaggaccgtacgtaaagatcttacctacacg
tgtcgagacatgaaggagtgcttgattgacaagcgccagcgaaaccgctgccaatactgt
cgctaccagaagtgcctagccatgggcatgaagagagaaggtgtgtgtgcagcggtgcag
gaagagaggcagcgaggaagggagcgaggggagaacgaggtagaatctaccagcagtttc
aacgaggaaatgcccgtggacaagatcctggacgctgagctggccgtggagcccaaaaca
gagacgtcatacaacgacggcagccccagcaactcaaccaatgaccctgtcaccaatatc
tgccaagcagcagacaagcagctcttcacattggtggaatgggccaaaaggatcccacac
ttctccgaactccccctggatgaccaggtcatcctactacgagcaggctggaacgagctt
cttatcgcatcattctcccatcgctccgtcacggtaaaagatggcatcctgttggcgaca
ggcctccacgtccacagaagcagcgcccacagtgctggagtgggctccatctttgataga
gtcctgacagagttggtatccaaaatgaaagatatgcaaatggataagacggagcttggc
tgcctgcgagccatcgtccttttcaacccagatgcaaaaggtctttcaagcccacccgag
gtcgaggcgctgagggaaaaggtttacgcctcattggagtcgtacacgaaacagaaatat
ccagaccagcctggcaggtttgccaagctgctgctccgcctgcccgccctgcgctccatc
ggcctcaagtgtctggagcatctgttcttcttcaagctgatcggggacactcctatcgac
accttcctaatggagatgctggaggctccgcatcagattacatga
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