Etheostoma cragini (Arkansas darter): 117950817
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Entry
117950817 CDS
T07493
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117950817
03015 mRNA surveillance pathway
117950817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117950817
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117950817
5.6.2.5 RNA 5'-3' helicase
117950817
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117950817
mRNA cycle factors
Common to processing body (P body) and stress granule
117950817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_12
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
UvrD-helicase
SRP54
ATPase
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
117950817
NCBI-ProteinID:
XP_034738053
LinkDB
All DBs
Position
9:complement(8911094..8929023)
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AA seq
939 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRLCKGSVDHFSVVLYLQQGRWSDLGNWVEALV
ASPSSRFLTTILHFVHTYVIQHFVASPQTNAYCHIDYCCPDLFFYLGRGAMKGKPGRGGR
QRIRGSAHQGASQGNGPNSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQ
DSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcggagttactcggagcggacacccagggctctgagtacgacttcaccgacttcactctt
cccagccagacgcaaactcaaggccagacgcagagccagctggacagccaggtaaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaaacgagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagaccttcct
gtgcacgcatgcagctactgtggaatccatgacccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacgctgcataaagatggtccactgggcgagacg
gtgctagaatgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggccgattccgtggtggtactgctctgcaggcagccctgcgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggatcgctgctttctg
tcctggctggtgaaaatcccatcggagcaggagcagcttcgggctcgtcagatcactgcc
cagcagatcaacaagttggaggagctctggaaggacaatcccactgccaccttggaagac
ctggagaaacctggagtggatgaggagccccagcatgttctgctacgctacgaagacgcc
taccagtaccaaaacatctttggccctttggttaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccactgtggaaaggcattggt
catgttatcaaagtccctgacaactatggagatgaaattgctattgagttgcggagcagt
gttggagcacctgttgaaatcccacataacttccaggttgactttgtgtggaagtccacc
tcctttgacaggatgcagagcgccctgaagacgtttgcagtggacgagacctctgtgtct
ggttacatttaccacaaactgctgggccacgaagtagaagatgttaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtatgct
gtgaagacagtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccaccatcgtctaccacctgtcacgacaaggcaatggaccagttctg
gtgtgtgctcccagtaacattgccgtggatcagttgactgagaaaattgacaagactgga
ttgaaggtcgtcaggctttgtgccaaaagccgggaggccattgagtcaccagtgtccttc
ttggctttgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctgaaggatgagaccggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtt
ggggctggagatcctcgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccacagagccggagtgcatggtgcccgtggtgcttggggccaagcagctcatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagctaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggattcggccaattcgcctt
caggttcagtaccgcatgcacccggctctcagcgctttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcactgcagctgaccgcatcaagaaagggtttgacttccag
tggccacagccggacaagcccatgttcttctatgtaactcagggtcaggaagagattgcc
agctctggaacctcctaccttaacagattatgcaaaggttcagtggaccattttagtgtt
gtactgtacctgcagcagggccgttggtctgacctaggtaactgggtggaggcattggtg
gcatcaccaagttcaaggttcctcacaaccatcttacattttgtacatacatacgttatc
caacattttgtggcctcgccacaaacaaacgcatattgtcatattgattactgttgtcct
gatctatttttctatctaggtcgtggagctatgaagggtaagcctggacgtggcgggcgg
cagaggattcgtgggtcggcacaccagggtgccagtcagggtaacggaccaaacagccag
gccagccaggatggggcctcccagcctttctcccaggggccgctaacacagggctacatc
tccatgagccagccctctcagatgagccagcctggcctctcccagccagagctgtctcag
gacagctacctaggcgatgagttcaagtcccaaatcgacgtggctctgtcccaggattcg
acataccagggtgaacgtgcataccaacatggtggggtgactggactgtcacaattctaa
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