Etheostoma cragini (Arkansas darter): 117950885
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Entry
117950885 CDS
T07493
Symbol
zgc:172302
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra02010
ABC transporters
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117950885 (zgc:172302)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117950885 (zgc:172302)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ecra02000
]
117950885 (zgc:172302)
Transporters [BR:
ecra02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117950885 (zgc:172302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
117950885
NCBI-ProteinID:
XP_034738175
LinkDB
All DBs
Position
9:complement(9310360..9339947)
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AA seq
2381 aa
AA seq
DB search
MGFFRQLALLLWKNITYRRRNKIQLIIELLWPLFLFVILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFHSPTPGEAQGQFGNFDNSILSRLFVDAQTVLSYSGNRR
FSGVQDLMESVRRLGERPGAWPNLPVEEYLRPNETFSTFLLTNGSLPPVTVDQLLKARLN
FQVSVAGAQMQLKDLVCNASMLQQFLTVDGGEVAMNDLQTQLCNLPADVLREAERLFLSQ
LDFTKFFTRDRLMANAGDFRFISEAVTSVSQELAVLIDDLSSLSSFADMSAALRLLSPEN
RSALPRESFRAFSRIMCGHPEIGGERIPSLNWYEDNDIKSFLGKNGTEDTDMDHDNNTTP
FCKDLIQGLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVQQVMKEVNKTFEDLQILQELN
EAWTEVGPQIKNYMESSVEIQLLQDLLRRPQVAVLVNLRLENTSWTASRIARFLSTPSPD
TPRKPGAAPTWLDIYNDLSHTLTTLAQVTECFSLNKLEGLETEGQMIDRALELLEDRQFW
AGVVFLLPNPLSPNLPPHVTYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGF
VYVQDLVEQAVSRILTGVKQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLGTGTLWFSWFISSIIPFLISAGLLIALLKWGDILPYS
NPTVVFFFLTAFANATIMQCFLISTFFSKANLAAACGGLIYFGLYLPYVLCVAWRDRLNT
TYRVLASFLSPVAFGFGCEYFSQYEEQGVGIQWYNLNSSPVEGDSYRFTTSIVMLYVDAF
IYATAAWYIEAVFPGEYGIPRPWYFVFQMNYWGGVPLELGMPIPPAPTDQDEDNIEPEPA
DLALGVSIRNLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYIKGMDIRYDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEAEVKAELD
TLLEDVGLLHKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCCGSPLFLKSRLGSGYYLTVVKRE
GLDTSTPSSTSICTNTSTNKLAPLKDSESSMSEDTGLGSEESSSYLAALLSLAQHHIPGA
RLVEDLGREAVVNLPQAAAKDSSLAIFLSELDQRLTEMGISSYGLSDSTLEEIFLRVAEE
TGVDAEPHLQAESPLRQQPSAGQRAESQNAEEAETGRKRLRKKEPQETDLLSGEGRGGIP
LMGWWLTWQQLKALFIKRWLYARRSHRGFFAQIVLPAVFVLVALLFSLIVPPFGKYPALQ
LQPWMYGKQYTFYSNDAPGNPAIENLLEALLDQPGFGTKCMEKEEEDNSTRSPQCEGERG
GPFMRPQVSYSTWQMFSRGNWSRDAPSPDCLCSTEDVRRMLPDCPQGAGGMPPPQIKRLT
GDILQNLTSYNISDYLVKTYSQILKKSLKTKKWVNEFRYGGFSLGGSATQTLSQVHHVQD
SIVAIRTRYRVPQNSSLDHLLNRLPDFLGGLNSQNNVKVWYNNKGWHAMVSFVNVINNGL
LRASLSPGPERKKYGITAYNHPLNLTKEQLTEMAMMTTSVDVLVSICVIFAMSFVPASFV
LFLIEERVSKAKHLQFVSGVKPILYWLANFTWDMLNYAVPATMVVLIFICFQQQSYVSET
NLPALVLLLLLYGWSITPLMYPASFVFTVPSTAYVVLTSINLFIGINGSIATFVLELFVD
EHLNEVNRILKKVFLIFPHFCLGRGLIDMAKNQAMADAFQRLGTKQTLDPLQWDFVGKNL
FAMAAEGVIFFIFTILLQYNFFIRFRPWWAEPAMPPLGPEDEDVARERERVTSGKAQSDI
LTMINLSKVYKLGRKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTSITYGEAL
LNHHSVLTEMERVHQLMGYCPQFNAISDLLTGREHLELYARLRGVPEESVTKVAQWGVKK
LGLTQYAEREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVT
KEGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGNGYTIILRLADPQFN
LDSCPISTYMKSSFPSIELKERHQSVLQYQLPSHACCLARVFEVLANNYEEMGVIDFSVS
QTTLDQVFVNFAKEQTDDDFLTDVVISNLTTLHTRINNLTIQPQPPITPPHSSKSPQQHG
KSSDSKPKEDKSKKPKVGKGKPKDGKANGEKSSSTAMTRIPQKEEKAQRTTRRGSSGSDS
SNDGVEGESSKSSKSKHREESSRKNPSALFIVDGNTQDSTL
NT seq
7146 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttttcgacagcttgccctcctgctctggaagaacatcacataccgcagaagg
aacaagatccagctgattatcgagctcctctggccgctcttcctcttcgtcatcctcatc
tcagttcgtcattcacaccctccctacaaacagagccaatgtcactttccaaacaaagcc
ttgccatcagcaggcaccttgccctggattcagggcattatctgcaacatcaacaacccc
tgcttccacagcccaacaccaggggaggcacagggccaatttggcaactttgacaactcc
atactgtctcggctcttcgtggacgcacagactgttctgtcctacagtggaaaccggaga
ttctctggcgttcaggacctaatggagagtgtccgaaggctgggagagagacctggagcc
tggccaaatctcccagtagaagaatacctgagacccaatgagacgttctccaccttcctc
ctgaccaatggcagcctgccgcctgtgactgtggaccagctgctgaaggctcgtctcaat
tttcaggtttcggtggctggagctcagatgcagctgaaggacttggtgtgtaatgcgagc
atgttgcaacagtttctgactgtggatggaggagaagtagccatgaatgatctccagact
cagctgtgtaacctgccagctgacgtcctgcgggaagctgaacgccttttcctctctcag
ctcgactttaccaagttcttcacaagagaccgtctgatggcaaatgctggagacttcagg
ttcatcagtgaagctgtcacttctgtttcccaggagcttgctgtcctcatcgatgatttg
tcctctctctccagctttgcggacatgagcgcagctcttcgtcttctgtctccagagaat
cgctcagcgttgcccagggagagttttcgcgcgttttcaaggatcatgtgcggtcaccct
gagattggcggtgagcgcattccatcgctcaactggtatgaggacaatgacatcaagtcc
ttcttagggaaaaacggcactgaagacacagacatggatcatgacaacaacaccactcca
ttctgtaaagatttgatccaaggtctggagtccaacccactgtctcgcattgtgtggcga
ggaataaaacctctgtttattggaaaactgttgtacacaccagatactcctgcagtacaa
caagtcatgaaagaggtgaacaagacctttgaggacctgcagatcctccaggagctgaat
gaggcctggacggaggtgggaccacaaatcaagaattacatggagagcagtgtggagatt
cagctgctgcaggatttgttgaggcggccacaggtcgctgttctggtcaacctgcgtctg
gagaacacgtcctggacagcctcacggattgcacgttttctgtcaacaccctcgccagac
accccaaggaagcccggagcagctcccacctggctggacatctacaacgacctcagccac
actttaaccacgcttgcacaagtcactgagtgtttctctctgaacaagctggaagggttg
gagactgagggtcagatgattgacagggctttggagctactggaagacaggcaattttgg
gcaggtgtggtatttcttctgcccaaccccttgtcccctaacctgccgccccacgtaacc
tacaaaatccgaatggacattgatgatgtgacccggaccaacaagatcaaggacaggttt
tgggatcctggtccggcagccgacccatttaatgacatgcgttacatttggggcggcttt
gtgtacgtccaggacctggtggagcaagctgtgagccgcatcctgactggagttaaacaa
acaaccggcatctacatccagcagatgccctacccctgctatgtggatgatgttttcctt
cgagtgctgaaccgctctctgccactcttcatgacactggcctggatctactcagtggcc
atgatcatcaaaggcgtggtatacgagaaagaggcgaggctgaaagaaaccatgaggatt
atgggtctgggaacaggaacgctgtggttcagctggttcatcagcagcatcatccctttc
ctgatctctgcagggctccttattgctctgctcaagtggggggacatcctgccatacagc
aatccaactgttgtgtttttcttcctgacggcgtttgccaatgccaccatcatgcagtgt
ttcctcatcagtaccttcttctctaaagccaacttggctgctgcatgtggagggctgatc
tacttcggactttacctgccatacgtactgtgtgtagcctggagagaccgcctcaacacc
acctacagagtccttgctagtttcctgtcccccgtggcctttggcttcggctgcgagtat
ttctctcagtatgaagagcaaggcgtgggcatccagtggtacaacctcaactccagcccc
gtggaaggagactcataccgcttcactacctctatagtcatgctttatgtggacgccttc
atctacgccaccgcagcctggtacattgaggcagtgtttcctggtgaatatgggatccct
aggccctggtacttcgtcttccagatgaactactggggtggagttccccttgagttgggc
atgccgatcccccccgcacccacagaccaggatgaagataacattgaaccagaacctgct
gacctggccctcggtgtgagcatcagaaacttggtaaaaatctacaagaagggagccaag
ttggccgtcaatcatctcaacctgaagttctacgaggggcaaatcacctctttcctcggc
cacaacggagccggcaaaaccaccaccatatctgtcctgactggcctgttcccacccacc
tcgggcactgtgtacatcaaggggatggacatccgctatgacatggacattatccggagg
acactgggagtttgtccacaacacaatgtcctgtttgacatactaacagtggaggagcat
gtgtggttttatgggtgtctgaagggtttatctgaagcagaagtaaaagctgagttggac
actctgctggaagacgtcggcctgcttcacaaacgacatgaacagacgaaaaatctctct
ggtggcatgcagaggaagctgtctgtggcgatcgcgtttgttggaggctctaaagtggtt
gttttggatgaacccacagccggcgttgacccttactcccgcagagggatctgggatcta
ctgcttaaataccgcaaagaccggaccatcatcctgtccacccactacatggacgaggca
gagctgcttggtgaccggatcgctatcatctcacaggggaagctgtgctgctgtggctca
ccgctcttcctcaaatcccgccttggatctggctactacctcactgtggtgaagagggag
ggactggacaccagcactcccagcagtaccagtatctgcaccaacaccagtaccaacaag
ctagctcctctcaaggacagtgagtcatccatgagtgaagacaccggcctgggaagcgag
gagagcagttcatacctggcagcgttgctttccctggcacagcaccacatcccgggtgcg
aggctggtagaggacttagggcgcgaggcggttgtcaatctgccgcaggcggctgccaag
gacagcagcctagccatcttcctgtccgaactggatcagagactgaccgagatggggatc
agcagctatggcttgtcagacagcacactggaggagatctttttgcgagtggcggaagaa
actggagtggatgctgaacctcatttgcaggctgaatctccccttaggcagcagccatca
gctggacagagggctgagagtcaaaatgctgaagaagcagagacaggaaggaaaaggctc
cgtaagaaagaacctcaggagacagacctgctgagtggagaaggccgaggtgggatcccc
ctgatgggttggtggctgacctggcagcagctgaaagctctcttcatcaagcgctggctt
tatgctcgaaggagccacaggggcttcttcgctcagattgtcctgcctgctgtgtttgtg
ctggtcgctctgctcttcagcctcatcgttcctccgtttgggaagtatccggctctgcag
ctacagccctggatgtacggaaaacaatacaccttctacagcaatgacgcccctgggaac
ccagccattgagaacctgctggaggctctgctggaccagccaggttttggtaccaagtgc
atggagaaagaggaagaagacaacagcactaggagtcctcagtgtgaaggcgagcggggt
ggcccattcatgcgaccacaggtctcctactccacctggcaaatgttcagcagaggcaac
tggagcagggacgcaccgtctcctgactgtctctgtagcacagaggatgtccgccggatg
ctccccgactgtccgcagggtgccggtggaatgccgcctccacagattaagaggctgact
ggagacatccttcaaaatctgacaagttataacatctctgattacctggtaaaaacctac
tctcagatcctcaagaaaagcttaaaaaccaagaagtgggtgaatgaattcagatatgga
ggtttctccctcgggggcagcgccactcagactttatctcaggtccaccatgtccaagat
tcaatcgtggcgatcaggactcgttatcgagttccgcagaatagttcactggatcatctg
ctaaacagactgccagattttttaggaggcctgaacagtcaaaacaatgtcaaggtgtgg
tacaataacaaaggatggcatgccatggtgtcatttgtcaacgtgataaacaacggcctg
ctgagagcaagtctgtcaccaggtccagagaggaaaaagtacggcatcactgcctacaac
cacccgctcaacctcaccaaggaacaactcacggaaatggccatgatgaccacgtcagtg
gatgtcctggtttctatctgtgtgatctttgccatgtcctttgtgccagcgagcttcgtc
ctttttttgattgaggagcgagtcagcaaagccaaacaccttcagtttgtcagcggggtc
aaacccatcctctactggctggccaacttcacttgggacatgttgaactacgcggtccca
gccaccatggtggtgctgatcttcatctgcttccagcagcaatcatacgtctcagagacc
aacctgcctgctctcgtcctgctcctcctcctctacgggtggtccattactcctctgatg
tacccagcatcctttgtgttcaccgtccccagcacagcctatgtggttctgacctccatc
aacctcttcatcggaatcaacggcagcatcgccaccttcgtcctggagctgtttgttgac
gagcatctgaatgaggtgaacaggatactgaagaaggtgtttctcatcttccctcatttc
tgcctgggacgaggactcatcgacatggccaaaaaccaggccatggcagacgccttccag
agactgggcacaaagcagaccctggaccctcttcagtgggactttgtagggaagaacctg
tttgcgatggcagctgaaggtgttatattcttcatcttcaccatactgctgcagtacaac
ttcttcattcgcttcaggccgtggtgggccgagcctgcgatgcctcctcttggtccagag
gacgaggacgtcgccagggagcgagaaagggtcacaagtggcaaagcccagtcagacatc
ctcaccatgatcaacctgagcaaggtttataaattaggaaggaagcctgcagttgatcgt
ctctgcctcgggatccctcgtggcgagtgttttggccttctgggggtgaatggagcaggg
aagacctctacttttcgcatgctgaccggagacacatccatcacctatggagaggcttta
cttaatcatcacagtgtgctaacagagatggagcgagtccaccagctgatgggttactgt
ccacagtttaacgccatcagcgacctgctgacgggtcgggaacatctggagctgtacgcc
cgtctgcggggagtgcctgaggagtctgtcaccaaggtggcgcagtggggcgtaaagaag
ctgggactgacacagtacgctgagcgggaggctggaggctacagcggaggcaacaagaga
aaactctcgactgcaatctccctcattggggctccacctgttatattcctggatgagcct
accactggcatggacccaaaagccaaaaggtttctgtggaactgcatcctcagtgtcact
aaagagggtagagctgtagttcttacttcccacagtatggaggagtgtgaggctctctgc
accagaatggcaatcatggtgaacggcagattccagtgcctcggatctgtacaacacctg
aaaaacaggtttggtaatggctacaccatcatccttcgtctggcggaccctcaattcaac
ctggactcatgccccatcagcacctatatgaagagctcttttcccagcattgagctgaag
gagcgccaccagagcgtgctgcagtaccagctgccctcacacgcctgctgcctggctcgt
gtctttgaagtgctggccaacaactatgaggagatgggcgtcattgacttctctgtttca
cagactaccctagatcaggtgtttgtcaactttgccaaagagcagacggatgatgacttc
ctcacagatgtggtcatcagcaatctcactacactgcacaccaggattaacaatctcacc
atccagccacagccgccaatcactccccctcattcaagcaagtctccacagcagcatggg
aaatcatctgacagcaaaccaaaagaggataaatcaaagaagccaaaagttggcaagggc
aaacctaaagacggcaaagctaacggagagaaaagcagcagtacggcaatgaccagaata
cctcagaaagaggagaaggctcagagaacaaccaggaggggcagcagtggatcagatagc
agtaacgatggagttgagggagaatccagtaaatccagtaagtccaaacacagagaagag
agctccagaaaaaatccttctgcactctttatagtcgacggcaacacacaggacagcaca
ctgtaa
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integrated database retrieval system
