Etheostoma cragini (Arkansas darter): 117951213
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Entry
117951213 CDS
T07493
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117951213 (pcdh18b)
Cell adhesion molecules [BR:
ecra04515
]
Cadherins
Protocadherins
117951213 (pcdh18b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
LapA_dom
Motif
Other DBs
NCBI-GeneID:
117951213
NCBI-ProteinID:
XP_034738718
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Position
10:9172597..9184236
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AA seq
1238 aa
AA seq
DB search
MRAKMIQTKGNIFSSAPFKLLLLVALVHGATGKTLKYKVYEEQKVGTVIARLKEDVAGVL
SKLPSSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNSNCSIEFDVVTLPT
EYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRVPLDGAMDADVGENSLHTYS
LTPNNFFKIDVRTRTDGAKYAELVVMRDLDREVQSSYQLQLTASDNGVPPKSGSTLLKIS
ISDSNDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKILE
TFKINPDNGHITLIKKVDFETTASYELDVQAHDLGPNSIPGLCKIVVKVADVNDNKPEIN
INLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVMCRLHGHGHFRLQKTYEKNY
MILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPSFEKSRYEVFKS
ENNSPGAYLMTVVASDPDLGTNGQVTYTVLDALVQGSPISTYVTIDPSNGAIYALRSFDH
EDVSRISFTVQARDGGNPVLTTNTTVLLTVLDENDNAPIIHSPSLRNHTAELPVWKYASP
GQLITALKVTDRDAGANGEVTCAIVGGNEDGLFVMDARRCELRTNASLVQAPRDVMEIRV
EVQDRGTNRLLTGALFRLSLQENMDILPPLYPTGSSQAPLDLSLIVIISLGAVCALLLIV
MVMFATARCNREKKDPRHNYNCRVAENSYQNHPKKPARQIHKADITLVPTVNGTLPVRAH
PHSPPGSPTPERGTLGSRQSHHSRQSLNSLVTISSIHVPENFALELAHATPPVEQVSQLL
SMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDR
LLGEGFTEIYAPDGQRRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSADYRSNLYIPG
EEAHQATDLSQEKTPQPCTDAGPARNQSFSTFGKDLGGEDGGDEEERGEAGGEARDEDLC
GTTSLLSEMSSVFQRLLPQGLDSYVQVNENHKGTSLSGVGVPMTGSLDRRRGHLPGKPNP
SVHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPCTKLGSQSSSHKGLQAPKNSP
QNSGHTPKPHNSPLLTALVSPTMVQPSPAPVPLPVPLPGPSSKWLPAMEEIPENYEEDDF
DSVLSHFQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgagggcaaaaatgatccaaaccaaaggaaatatattctcttcagcaccattcaaacta
ctgctgttggtcgcgcttgtgcacggcgcaaccggtaagactttgaaatataaagtttac
gaggagcagaaagtgggcacggttatcgcaaggttaaaggaagatgtagctggggttttg
tccaaactgccgagttccctgacctttcggttccgcgctatgcagcgggggagtacgccg
ttcctgtctgtccgagaggaggacggggagatcagcattggcaccaaaatcgaccgcgag
aagctttgcgagaaaaactccaactgctcgattgaattcgacgtggtcacactgccgacg
gagtacctgcagctgttccatgtggaggtggaagtgctggacataaacgacaactcgccg
cacttctcccgcgccatcgtccccatcgagatctccgagagcgcatccgttgggacgcgc
gtcccgctggacggcgccatggacgcggacgtgggggaaaactccctgcatacatattcc
ctaacgccaaataacttcttcaagatcgacgtgaggacccggacggacggggccaagtac
gcagagctggtggtgatgagggacttggaccgggaggtgcagtccagctaccagctgcag
ctcacggcctcggataacggcgtgcccccaaagtctggctccactttgctcaagatcagc
atctcggattccaacgacaacagcccagcctttgatgagcaggcttatatcatcaatttg
ctggaaaactcccccctagggactctgatcattgatttaaacgccacagatccggacgag
ggcactaatgggaaaatagtgtactctttcagcagtcacgtctcgccaaagatcttagaa
acctttaagatcaacccggataatggccacattactcttattaaaaaagtggactttgaa
actactgcctcctatgagctggatgtacaggcccacgacttgggccctaattccattcct
gggctttgcaaaattgtggtgaaggtggcggatgtaaacgacaacaaacccgagataaac
atcaacctgatgacgcctggcaaagaggaagtggcgtacatttcagagggcgccccagtg
gacaccttcatcgctctggtacgcgtggacgacagcgacgcggggctcaatggcgaggtg
atgtgcaggctgcacggacacggccacttcagactccagaagacctatgagaagaactat
atgatcctcaccaatgtctcgctggacagggagaagaggtccgagtacagtctgacggtc
atagccgaggacaggggctcccccagcctctccaccatcaaacacttcaccgtccaggtg
cttgacgaaaacgacaatcctccgtctttcgaaaagagccgctacgaggtcttcaaatcc
gagaacaactcccccggagcctacctaatgaccgtggtggcctcggatccagacctgggc
accaatggccaggtcacctacaccgtcctagatgctctggtgcaggggagccccatctcc
acctatgtcaccattgacccttccaatggcgccatctacgccttacgcagctttgaccac
gaagacgtcagccggatttccttcaccgtgcaggcacgtgacgggggaaacccagtgctg
acaaccaacaccaccgtccttctgactgtcctggatgaaaatgacaacgcgcccatcatt
cactccccgtccctccgaaaccacaccgccgagctgccggtgtggaagtacgcatcgccc
ggtcagcttatcaccgcgctcaaagttacagaccgcgatgccggtgccaatggagaagtg
acctgcgccatcgtcggtggcaacgaggacgggctgtttgtgatggacgcccggcgatgt
gagctcaggaccaacgccagtctggtgcaggctcctcgggacgtgatggagattagggtg
gaagtgcaggacaggggcaccaatcggctgctcacaggtgccctcttcaggctctccctg
caggagaatatggacatcctcccccctctctaccccaccggctccagccaggcgccgctg
gatctctccctcatcgtcatcatctctctgggcgctgtttgcgctctgctgctcatcgtc
atggtgatgtttgccactgcccgctgcaaccgcgaaaagaaagaccccagacacaactac
aactgtcgcgtggcagagaacagctaccagaaccaccccaagaagcccgccaggcagatc
cacaaggcggacatcaccctggtcccaaccgtcaatgggactctgccagtgcgtgcccac
cctcactcccccccaggctcccctacaccagagaggggcaccctagggagcaggcagagc
catcacagccgccagtcgctcaacagcctggtcaccatctcctccattcacgtgccggag
aactttgcactcgagctggcccacgccacccctcctgtggagcaagtctcacagcttctg
tccatgctccatcagggccagtaccagccacgaccaagcttcagaggcaacaaatacacc
cggagctacagatatgccttgaatgagatggataagttcagtctgaaggacagcggacgt
ggagacagtgaggcaggggacagcgactacgagcccggcagggagtcacccatggaccgg
ctccttggtgagggctttactgagatatatgctcctgatggccagcgcagaacgcatgca
gctatgaggctctgcacagaggagtgtcgtgtcctgggtcactcagatcagtgctggatg
ccccccctggcctccccggcctcctccgccgactaccgcagcaacctctatatccctgga
gaagaagcccaccaagcaaccgacctctcccaggaaaagacaccgcagccatgcaccgac
gctggccctgcccggaaccagagcttctctactttcggcaaggacctggggggtgaggac
ggtggagacgaggaggagcgaggggaagctgggggcgaggccagggatgaagacttgtgc
gggaccacgtcgttgctgtcagagatgagcagtgtgttccagcgcttgctaccgcagggt
ctggactcgtatgtccaggtcaacgaaaaccataaggggactagtctcagcggggtgggg
gtacccatgactggatccttggatcgcaggaggggccatctccccggcaagcccaatccc
tccgtccaccagcagggcgtggcagcttgggccgctaacacccacttccagaacccggga
agcagcatcggcccatctggccaccaccaggggggcagctaccacaccctaaaaccctgc
acgaagcttggctcccagagtagcagccacaagggcttgcaggcacccaaaaacagcccc
cagaacagcggccacacccctaaaccccataacagcccccttctcacggcactggtcagc
cccactatggtgcagccgtcccccgcgcctgtgccattgccggtgccgctccccgggccc
tcttccaagtggctgccggccatggaggaaatcccggagaactacgaggaggacgatttt
gactctgtgctcagccactttcagggcaaacgcagcgacagccgacatgagctggtggac
gccagcgagctggtggccgagatcaacaaactcttacaggatgtccggcagagctag
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