Etheostoma cragini (Arkansas darter): 117951253
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Entry
117951253 CDS
T07493
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117951253 (sh3tc2)
Membrane trafficking [BR:
ecra04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
117951253 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_2
TPR_1
SH3_2
SH3_9
TPR_10
SH3_1
TPR_MalT
TPR_7
Motif
Other DBs
NCBI-GeneID:
117951253
NCBI-ProteinID:
XP_034738755
LinkDB
All DBs
Position
10:complement(169511..194393)
Genome browser
AA seq
1572 aa
AA seq
DB search
MALISGSCRLLGQMASCCCRPLLNSSCCGPFIKVCLSSFTDISPAELDALWREPPYALGG
VNEHFSGNDIMTQGVVEEEDGPVVESGEGGEEPDSYWKKKEAFLRGSTVTLGEKFSSEIV
LLFTGQRRSSVNPDQALQEALRTRLRVVESNSQDVIQLFKDLSARLVSVHAEKDSFVLTF
KTVEEIWKFSTYLALGYVGRCLENFLCDQSFWLDPELFSDLQINVTVDEEHLATLYLGLL
LQEGSFFAKALFTRSEQDEDDEEQLSFKKNDLLMVRNTGQDEMWEGTMLSTGNHGLVPVN
AMQPLPYPFYQWFLRKYPGNVGCSLAEKEPFEHAIVTGSCVAVVNYSPAGPDELLLSQGD
IVEIQGLLVRGLDIFIGKHTSTGHNGFVHKAHVKPLDAVTLEGQLVFLTEEERASLAQIN
PCSSEPSDSGLLERLFSSDISSVYRLDRLDETDFKYIRNRPKRDHKIPESTRQSIMSEKG
GGTPPYHSSPQASLSHSSPRLSGYQSHYPLPREGERLSFTLDDTFRELDEFQEDPPLFLE
QNSWEGQDSEFNNPTLTLLNHEHFQEDFLPLYDLQYSFLWVNFSGKTEDELSGHLESVRD
CSKRMGLHWAHRRACFLLGRLCARKLKFSQARVYYEEALSVRVDSFSDTPLLIALFTNLT
AVYLKQRMADKLSQTLEKAGALLLCLPCHTFTSTDEVELLQLLLRRSVVMGDKHLEARVC
YLISSLFLLLGKTEDALPFVERLQFLSRTLSAAEGLPIVPLDLNWLLSWLYHRKYMPYLA
LASLSLDSRQDHSLPDAFLRIELFIRNSVRLNPCWKEGTSLLPAQIVIYLQQALIIAKQG
EDMKTQRDLCQGLATIYQQYDALDEAVHCAQQAVETGGHVIEEEGFEASVLLGWLLVLTG
QVEKAQSVLLPLLTSLQGTDSPTQRGVIHNLLALSLRRQGRIPEAGWHLHSALVISRESG
HQRNQALALANLGCLALDVGASLVAERFLVRSLHLFLELWESPTDEEHIQAYLWLGRSYK
DRRKSQDSRACYEMGLLIALHARNLHSQMVVAKVLSRLYADLMLYGQSIVYYELCVSVSR
ELKDKRLEGEFLEILSSVYLSLNTERSSRKSLDYTKQSLRISIDLGKREEESETWLQVGR
IYYLIQEDELADMYLQAAVKTALRMNDHHFAMSIYEEAGDVYFKGIRNRMASLPFYRDGS
LPFARSIKDIRSEFRLLSKLTELLMKQGEQDEALQYATLAVEIASKTALQLNERTAYHRL
ATVYYRLQQYEMAENYYLKSLSLCPPVLQDPMEARYYTKVYCRLGNITLHKLKDSFDAVG
YFQLALAAAMEDQANPEALYVVYMKLAEIHGNHMPDAQLCQVYRDRAQNLKRLLAGEEGA
AVREENMKDADTENVQKKDENSNADMEHRPTDSLVNRKTPTTENEKCEDNSIPRTFIHGD
TENKCADTNIGDVNWKEDPDINLDTDGPFMNAFGSETETIASQSYSDSLLTESFETAKED
ISDSSSSTDTLQTYQNQTDEKGFDTVHSFPSPIPDNYTGDITRHTDALNADSDTQDEQNT
SAKETDVHEDPL
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctctgggagctgccggctcctgggccagatggcgtcttgttgctgcaga
ccgctgctcaactcctcctgctgtggacctttcatcaaagtctgcctctcctccttcaca
gacatctctccagctgagctggatgctctttggagggaaccaccatatgctctcggggga
gtaaatgaacacttctcaggaaatgacatcatgactcaaggtgttgttgaggaggaggac
ggtcccgtggtggagtcaggtgaaggaggggaggagcctgacagctactggaagaaaaaa
gaggcctttctcagaggaagtactgtcacactgggagagaaattctcctcagaaattgtg
ctgctgttcaccgggcagaggcgctccagcgttaatcctgaccaagccctacaggaggcc
ctgcgcacccgactgcgggtggtggagagcaacagccaggacgtcatccagctctttaaa
gacttgtctgcacgtctggtgtctgtccacgctgagaaggatagctttgtactcacattc
aagactgtggaggaaatctggaagttttcaacttacctagcattaggttatgttggtcgc
tgcttggagaacttcctgtgtgatcagtccttctggctggacccagagctgttcagtgac
ctgcagatcaatgtaactgtggacgaggaacatttggccaccctttacctaggactgttg
ctccaggagggatccttctttgccaaggcgctattcacaagaagtgagcaggatgaggac
gacgaagaacagctgtcattcaaaaagaatgacttgctgatggtgagaaacacagggcag
gatgaaatgtgggagggcaccatgctctccacaggaaaccatggcctggtgccagtcaac
gccatgcaaccgctgccttaccctttctatcagtggttcctgaggaagtacccgggcaat
gttggatgttcgctagcagaaaaggaaccatttgaacatgctattgtgacgggttcctgt
gtagcagtggtcaactacagtccagcgggcccagatgagcttctgctgagtcaaggggac
attgtggagatccagggtctactagtccgaggccttgacatcttcataggaaaacacact
tccacagggcacaatggttttgtacacaaggcccatgtcaaacctctggacgccgtaacc
ctagaaggacagttggtctttctgactgaggaggagagagccagcctggctcagattaac
ccctgcagctctgagccaagtgacagcggcctgctggaaagactcttctcgtctgatatc
agctccgtgtacaggctagacagactggatgagactgacttcaagtacattagaaatcgt
ccaaaacgtgatcataagattcctgaaagcacccgtcagagcatcatgtcagagaaaggt
ggagggacacccccgtaccactcctctcctcaagcctctctgtctcactcctcccctcgt
ctgtccggctatcaatcccattatcctctgccacgcgaaggagagcgtctttccttcact
ctggatgacacgttcagagaactggacgaattccaggaagacccacctctcttcttggag
cagaacagctgggaggggcaggactccgagttcaataaccccacactgaccctgctcaac
catgaacacttccaggaggacttcctgcccctgtacgacctgcagtattccttcctgtgg
gtgaactttagtggtaagactgaggatgagctttcagggcacctagaaagtgtcagggat
tgttccaaaaggatgggcttgcactgggcacatcgacgggcatgcttcctcctgggaaga
ctctgtgccaggaagctaaagttctcccaggcccgtgtgtactatgaggaggctctcagt
gtccgcgtggacagtttctcggacacgccgctcctcattgctctcttcacaaacctcacc
gctgtctacctgaagcagcgtatggcagacaagctgtcccagactctggagaaggccggt
gccctgctcctctgtctgccctgccacaccttcacctccacggacgaggttgaactgctg
caattgctcctgaggagatcagtggtgatgggggacaaacacttggaggctcgcgtctgc
tacctcatctccagcctcttcctgctgctcgggaagactgaggatgctcttccgttcgtg
gagcgactgcagtttctctcaaggacgctttctgctgcagagggacttcccatagttcct
ttggacctcaactggcttttgagctggctctatcatcgtaaatacatgccttacttagca
ctggcctctctgagtctagactcaagacaagaccactccctccccgatgctttcctgagg
attgagttgtttatcaggaactctgttcgcctaaacccgtgctggaaggaaggaacctcc
ttgctgcctgcccagattgtgatttatcttcagcaggccctgattatagctaagcaaggg
gaggacatgaagacccagagggacctgtgtcagggcttggccaccatctaccagcagtat
gatgctctggatgaggcggtacactgtgcccaacaagctgtggagacaggaggccacgtc
attgaggaggagggctttgaggcgtctgtgctgctcgggtggctgctggtgttgacaggc
caggttgagaaggcccagagtgtcctactgccactgctcacatctctccagggcacagac
agtcccacacagcgaggagtgatccacaaccttttggctttgagtctgaggcggcagggc
cgcatcccagaggcaggctggcatctccactctgccctggtcatctccagggaaagtgga
caccagaggaaccaggccctggcattggccaacctgggctgcctggcactcgatgtgggg
gcatctttggtggcagaacgcttcctagtcagatccctgcatctttttctggagctctgg
gaaagccccacagatgaggagcacattcaggcctacctttggctggggcggagctacaaa
gacaggaggaagagtcaggacagcagggcgtgttatgaaatggggctacttattgcacta
catgccagaaatctacacagtcagatggtggtggccaaggtgctgagtcggctctatgcc
gacttgatgctgtacggccagagtatcgtctactatgagctctgtgtgtccgtttccaga
gagctgaaggacaagagactggagggagagtttctggaaatcctcagcagcgtctacctc
tcactcaacactgaaagatcatctcgtaaatctctggactacaccaagcagagcctgagg
atttcaatagatttgggcaagagagaggaagagtcagagacgtggctgcaggtgggacgc
atctattacctcatccaagaggacgagctagctgacatgtacctgcaggcagcagtgaag
acagccctgagaatgaatgatcatcactttgccatgagcatctatgaggaggcaggcgac
gtctactttaaaggcatcaggaaccgcatggcttcactgcctttctacagggacggcagt
ctgccatttgcacggagcatcaaggatatccgttcagagtttcgtttgttgagtaaactg
actgagctgttaatgaagcagggagagcaggacgaggctctgcagtacgcaaccctggct
gtggagattgccagcaaaacagctttgcagttgaatgagaggacagcctaccaccggctg
gctacagtctactaccgcctgcagcagtatgagatggcggaaaactactacctgaagtcc
ctgtccctctgtccgcctgtcctgcaagaccccatggaggctcgctactacaccaaggtg
tactgcagactgggaaatatcactctccacaaactgaaggattcttttgatgcagtgggc
tacttccagttagctctggcagcggccatggaggaccaagctaaccccgaggctctttat
gtggtgtacatgaagctggctgagatccacggcaaccacatgcccgatgctcagctgtgc
caagtttacagagacagagctcagaatctgaagaggcttctcgctggagaggaaggcgct
gctgttagagaggaaaacatgaaggatgcagacacagagaatgtccaaaagaaggacgag
aactctaatgctgatatggaacataggcctacggatagtttggttaacagaaagacgcct
acaactgaaaatgaaaaatgcgaagataactcaattccaagaactttcattcatggagat
acagagaataaatgtgccgacactaacattggagatgtgaactggaaagaagatcccgac
attaatcttgatacagatggcccttttatgaacgcctttgggtctgagacagaaaccatt
gccagtcagtcgtacagtgacagtcttcttacagagtcctttgaaacagccaaggaggac
atctcagactccagcagctccactgacactttacaaacataccagaatcaaacagatgag
aaaggctttgatactgtccacagttttcctagtccaatacctgataattacaccggtgac
atcacaagacacacagatgccttaaacgcagattctgatactcaggatgaacaaaacaca
tccgcgaaagaaacagatgtgcacgaagatcctctttaa
DBGET
integrated database retrieval system
