Etheostoma cragini (Arkansas darter): 117951357
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Entry
117951357 CDS
T07493
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117951357 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117951357 (polr1a)
Enzymes [BR:
ecra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117951357 (polr1a)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117951357 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
CDC45
Nop14
HMG_box
Motif
Other DBs
NCBI-GeneID:
117951357
NCBI-ProteinID:
XP_034738936
LinkDB
All DBs
Position
10:4371573..4406729
Genome browser
AA seq
1694 aa
AA seq
DB search
MLFGKDVPWRRLEGLSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLTCNKLTCPRAAIHLL
LNQLKLVDHGNMKEVYQVEQVLSQHLEENPKATGDEIEQVLKNFTDAIVGENAEGSENTK
PIKHLVEKKSSLINDFWKIHMKTRKCPYCRSGRFTVRREHNSKLIVTMPSGVQTGDNTNE
DLMAGKRVYLTASTAREHTNKLWEKEGFFLKCLFSGLEQGTLSKEGETCFYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGLIRKLLALIAGEKTIQEEEAPDPKDQ
TFLLGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMLTEKYPGIRQILEKKDGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPNVHP
GASMVINEDGRRTILSPTSLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGGTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKSGANRQRKKIIQESLKIGTKALQAAFNLPANVDQAEAQSRWQDAHLNP
DQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
SRQFPFIEDNYEVIKKFQGLDEVLARLDPKTASQHFASIQRWRAKREVACPRRGAFLMFS
QKKLAKLRQTEQSTEPDVHGRNAAVLQLVQQWRSLDDSGKSKYSRKSSRCPEPSLGVFRP
DVCFGSVSENFHSITEKYLEDEGRMSRDSLDTDSLRQLLNYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKR
AKTLRKKLTRVCLAEVLQKVDVVETLRIESHQKMRMFKVSFNFLSPYRYCDDKLLSPHQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHDGEGTADTAELGDVEGEEEQ
VIVDDQGNEGDADASDAKRKDKQEEEVDYESEEEDRGDDGEDKDDQGEDEEENAEENAEQ
TTPEESQPESVGGRAERKTKRARRGGEEESLSQMRVNSVLESNPAIERYCYDLEHELWCE
VDLVLPVSKVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTKKTGEKETVLNTEGINMH
EMFKHSDILDVNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVAD
YMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDELVSPSACLVVGKVV
KGGTGLFELKQPLQ
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagacgtaccatggcggcgactggagggcttgtcgtttggcatgtat
tctgccgaagagataaggaagttgagtgtgaagactatcactaacttcaggttcctcgat
gctgttgggaatgtggcccccaacagcctgtacgatctggccctgggaccagcggacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtcccggacacctgggacat
gtagagctaccgctacctgtatacaacccactgttctttgataaactttacctgttgatt
cgtggttcctgtctcacatgtaataagttaacatgcccccgagctgccatccacctgctg
ctgaaccagctgaagttagtggaccatggaaacatgaaggaggtctaccaagtagaacaa
gttctcagccagcacctggaggagaatcccaaagccaccggagatgagattgagcaggtg
cttaagaattttacagacgcgattgttggagagaacgctgaaggttcagagaacaccaaa
ccgattaaacatcttgttgaaaagaagagcagtttgataaatgacttctggaagatccac
atgaaaactaggaagtgcccttactgcaggagtggcaggtttacagtgcgtcgtgaacac
aacagtaagctgattgtcacaatgccatcaggagtacagacaggggacaatactaatgag
gatctgatggctggaaagagagtctacctgacagctagtaccgctagagaacacaccaac
aaactgtgggagaaagaaggcttcttcttgaagtgtctgttctctgggctggagcagggt
acgctgtcaaaggagggagagacatgtttttatcctgaccttttcttcctggaccttctg
gtggtcccaccttgcaggtatcgtccaattaatcgtctgggtgaccagatgttcacaaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgcggactcatccggaaacttctg
gctctcatagcaggggagaaaactattcaggaggaagaggctcctgacccgaaggaccag
acatttctgttggggatccccggacagacgctaacagataaactctacaacatctggatc
cgactacagacccacgttaacattgtctttgacagtgacatggataaaatgttgacggag
aaataccctggaatcagacagatcttggagaagaaggacggattgttccggaagcatatg
atgggaaaacgagttgactttgccgcaagatctgtcatctgtccggacatgtacataggg
accaacgagatcggaatacctatggtgtttgccaccaagctgacctacccccagcctgtc
actccatggaacgtgaaggagcttcgtcaggcggttatcaacgggcccaacgtccacccc
ggcgcttctatggtgataaacgaggacggcaggagaaccatcctttcccctaccagcctt
gcacagagagaagctgttgccaagcaactgctgacgccctgtcctggtccacataagatg
cccatgaagatcgtgaatcgtcatataaagaacggagacgttttgttactgaaccgacag
ccaactttgcatagaccctccatacaagcccactgtgcacgcatcctaccaggagagaag
gtactaaggctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgaa
atgaacgcacacttccctcaaagtgagctggccagagcagaggcctacacgttagtcagc
actgaccagcagtacctcgtccccaaggatggcaaacctttggcaggtctgatccaggac
cacatggtatctgggacgaggatgaccatacgaggctgtttttttaccagagtccagtac
attgagttggtgtacagaggactgacagacaaaccaggcagagttaaactgctgccaccg
gccatactcaaaccccagcagctatggacagggaagcaggtggtgtccacgctcctgctg
aatgtaatcccacagaaggctgtgcctctcaatctggtcggcaaatcgaaaatccccagc
aaagcatggatccaagtcccaccgcgagctgctccaggatacagacctgacagcatgtgt
gactcacaggtggtgattcgtcagggggagctgttggtgggggttctggacaaagcccac
tacggctcctcagcctacggtctggtccactgctgctatgagctgtacggaggggggacc
agtggcaaactgctcagctgtctggctcgactcttcactgcttacctgcagctgtacagg
ggctttactctaggcgtggaagacatcctggtaaaatcgggagccaacagacaaaggaaa
aaaatcattcaagaatcactgaagattggcaccaaagctctccaggcagccttcaacctg
cctgccaacgtggatcaagctgaggcccagagccgctggcaggatgctcacctcaaccca
gaccagagagacttcagcacggccgaccacaagttcaaagaagtggccaaccaagtgaac
aatgacattaacaaggtgtgcatgccggtcggactccacacctctttcccagacaacaac
ctccaattgatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttca
tgtctactaggtcagatcgagttggagggccgtaggcctccactgatgccttctgggaaa
tccttgccgtgtttccagccatatgatccttcacctggtgccgggggctttgtttctgga
agattcctcacaggcatcaaaccacaggagtttttcttccactgtatggccggcagagag
ggactggtcgacacagctgtgaaaacgtctagatcaggatacctgcagagatgtgtcata
aagcatctggagggtttggtagtgcagtatgatctgacggtgagggacagcgacggatct
gtggtccagttcttgtatggcgaagatggactggatattcccaagactcagttcctgcag
tcaagacagttccccttcatcgaggacaactacgaggtcatcaagaagttccagggcctg
gacgaggtgttggcccgtttggacccgaagaccgccagtcaacactttgcgtccatccag
cgctggagagcgaagagagaagtggcatgtccccggagaggagcattcttgatgttttct
caaaagaagttggccaaactgagacagactgaacaaagcacagaacccgatgtccacggc
agaaatgctgctgttctgcagctcgtacagcagtggcgctcgctggatgactccggcaaa
tcgaaatacagcaggaagtcgtcccgctgccctgagccatctctgggcgtgttcaggccg
gacgtctgcttcggctcggtatcggaaaactttcacagcatcacagagaaatacctcgag
gacgaaggtagaatgagtcgagacagcctggacaccgacagccttcggcagctgttgaac
tataagtggcagcgttcactgtgtgatccgggagaagcagtgggtctgctggcggcccag
tccataggcgagccctccacccagatgacccttaacaccttccactttgctggcagagga
gagatgaacgtcactttggggatacctcgactgagagagatcctgatggtggccagctcc
aacatcaaaactcccatgatgagcgttccagtgctgaacaacaagaaagccttgaagagg
gccaagacgctccgtaagaaactgaccagagtctgtctggctgaggtgctgcagaaggtg
gatgtggttgagacactacggattgaaagtcaccaaaagatgcggatgttcaaagtctcc
tttaacttcctttctccttaccgttactgtgacgataagctgctatcaccccatcagatc
ctccactacatggaaacaaggtttttccgtctcctcctcgaagccattaagaagcgcagt
gccaagctggcttccattgccgtggaaacaaggaaggccacccccagagataaggaccat
gatggcgagggaacagctgacacagcagagttaggcgacgtagagggcgaagaggagcag
gtgattgttgatgaccaggggaacgaaggagacgccgatgcttcagatgccaagcgaaaa
gacaaacaggaagaagaggtggactacgagagtgaggaggaggacagaggggacgatggc
gaggacaaagacgatcagggggaggacgaggaggagaacgcggaggagaatgcggagcag
accacgccggaggagtcccagccggagtccgtgggagggagagcggagaggaagacgaaa
cgagcgagaagaggcggagaggaagagagcttgagtcagatgagggtgaactctgtcctg
gagtccaaccccgccatagagagatactgctacgatctcgagcacgagctgtggtgtgag
gtggacctggtcttaccagtgagcaaggtgcactttgacctgacttcagtcctgtccaca
ctggcccagaacgccgtcatcatggagaccagaggcctgacacgctgcctgctgagcgaa
accacgaagaagacgggagagaaggagacggttctcaacacagagggcatcaacatgcat
gaaatgttcaagcacagtgatatcttggacgtcaacagactgtactccaatgaggtccac
gccatggctaacacctatgggatcgaagtggctctgaaggtgatcgagaaggagatcaaa
gatgtctttgctgtctatggcatcgaggtggaccccagacatctgtccctggtagcagat
tacatgtgttttgaaggtgtctataagccgttgaaccggcacgccatccgctccaactcc
tcccctctacagcagatgaccttcgagaccagctacaaattcctcaaacaggccaccatg
ctggggtcacatgatgagctggtgtcaccctcagcctgcctggtggtgggaaaagtggtc
aaaggtggaacaggactgtttgaactgaaacaacctctgcagtag
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integrated database retrieval system
