Etheostoma cragini (Arkansas darter): 117951622
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Entry
117951622 CDS
T07493
Symbol
pcdh12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117951622 (pcdh12)
Cell adhesion molecules [BR:
ecra04515
]
Cadherins
Protocadherins
117951622 (pcdh12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
117951622
NCBI-ProteinID:
XP_034739286
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Position
10:28130299..28151529
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AA seq
1182 aa
AA seq
DB search
MLLALLLVLSLCSDARSSEPSSITIQYRVWEEQPTGTRVGRLVDDLRQRDEGGPLEDFQV
VEHGKALPFSVSTRDGVVSTQGRLDREELCSGSDLCEVAFSVLYRKIGAMNCLRVRVEVM
DLNDHSPSFPSALQEVEISETAGLRMRIPLERAIDPDAGPNGLQTYSLSVNQHFALDVTV
APGGTKQAELVVIKELDREVQATFDLTLVAWDKGNPPRSGSTLVRVNIQDSNDNSPMFED
STPTVELFEDTARGATIINLKATDPDQGANGEVEYSLSKHARPEVHKLFYVNPQSGAVSI
KAPLDYEAQTSYEVIIQARDRGPNAIATHCKLHVKLRDVNDNAPRIHMTWTPPNSPMATV
LEGALEDTFLALVMVSDADSGGNGKVRAQIQQGSGPFRLKRIHGDNYMIVTNGSLDREKV
MQYNITVLAQDYGDPPLSCVKHLPVHVLDENDNAPVFSTSLYKASFRENNMAGYHALKVE
AHDVDLEFSGRVSYFIRNPNEVESNPLSFSIHPTSGVISVQRPLDYEESHTYSFMVEAID
QGHPPLTSTASVQIDVQDVNDNYPVIKEPKPRKGVAFLSVPVNTDKGEIVTELGNDIEEG
FTPLPINHSVGEGLVGFLASTIQAEDPDSGLNGQLSYHITDGNPFGLFWLDRATGQLFVN
TTNATELIGKTFKMNIAVSDMGSPSLTTKSTLEVTFINLKDHLKNSSPGNRGQLSFTMMM
AICLGGTCLLLLFAIALVTTFCRPEKRDSRAYNCRQAESTYTSHPRRPQKNIRKSDIQLI
PVIRGRKEETAEDDSEAQPLAPPPMLSDDQQSERQYTLAASVMNTSFHSQGYQEVDATQP
ATHHCRTLRKPANIELDGTLPLTPATSYRTLRKARNPSSSSSSVSRSSTLKRQTPVEREE
AEPLSSASQATLRRPRTSEGRGGPDAEHRQMLRNLVRLSMAAFGDSIELSSASPEVQQIS
QLLSLLRQGQLQPRPNFRGNKYSHRNGSQKQFLRGARLVSWLSVRPVSRSSVLAAAAADL
VKEIKNNSSSNISFCLSVSADDVFSEVSDPAWMARLSLPLGADYHDNVFVPNGPPSPESE
VLPRDALDSSSFSTFGKTPEKDGPLGGALLSEVSTLFEMLMTQKADAHPGPRPDVLYRLS
AAYRRSLGLDCSTNMAAGGNAPRNSGNAEKRAGLAAPSGLYQ
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggctctgcttctggttctgagtctttgctctgacgctcgctcctccgagcca
tcatcgataaccatccagtaccgtgtttgggaggaacagccgacgggaacccgggttggc
cgtctggttgacgacctccggcaaagggacgaaggtggtcctctggaggatttccaggtg
gtggagcacgggaaagcccttcccttctccgtcagcactcgagatggggttgtgtccacc
cagggccggctggacagggaggagctgtgcagtggctcggatctgtgtgaagtggccttc
agtgtcctttacaggaaaattggtgctatgaactgcctgcgggttcgagtggaggtgatg
gacctgaatgaccacagccccagcttccccagcgccctgcaggaagtggagatctcagag
actgctggcctcaggatgcgtatccctttggaacgggccatcgatccggacgcaggaccg
aatggcctccagacctactcgctgtccgtcaaccaacactttgctctggatgtgacagtc
gcaccaggtgggaccaaacaggcagagctggttgtgatcaaagaactggacagggaggtt
caggccacatttgacttaaccctagtggcatgggataaaggaaacccccccaggtccggg
agcacattagtccgtgttaatattcaggactcaaatgataacagccccatgtttgaggac
agcacacccactgtggagctatttgaggatacggcccgtggggcaaccattatcaacctc
aaagccactgacccagaccagggtgccaacggggaagtggagtattcgcttagtaagcac
gcacgtccagaggttcataagctcttctatgtcaatccacaatctggagctgtgagtatc
aaagcacctctggactacgaggcccagacctcttatgaagtcatcatacaggcccgtgat
cgtgggcccaatgcgatcgccacgcactgcaaactacacgtcaagcttagggatgtaaac
gacaatgcaccgaggattcacatgacctggactccacccaactcacctatggcaactgtg
ctggaaggagcactagaggacaccttccttgctctggtgatggtctctgatgctgattca
ggaggcaatggcaaagtgagagcgcaaattcaacaaggatctggcccttttcgccttaaa
cgaatccacggtgacaattacatgattgttaccaatggcagcctggatcgagaaaaggtg
atgcagtataacatcacggtcctcgcccaggattatggagatccgccactgtcttgtgtt
aaacacctgcctgtccacgttctggatgagaatgacaacgcccctgtgttctccacctct
ctgtacaaggcctccttcagggagaacaacatggcaggctaccacgctctcaaagttgaa
gcccatgatgttgacctggagttcagcggaagagtttcctacttcatacgcaaccctaat
gaagtggaatctaaccccctgtctttctccatccaccctaccagtggtgtcataagcgtc
cagcgtcctctagactatgaggaatcccacacctactctttcatggtggaggccattgat
cagggtcatccgcctctcaccagcacggcttctgtgcaaatcgacgtccaggatgtcaac
gacaactacccagtcatcaaggagccaaaacccagaaagggcgtggcttttctaagtgtg
cctgtcaatacagacaagggggagattgtgactgagctgggaaatgacattgaagaggga
ttcacacctttaccaatcaatcactcagtcggagagggacttgttggattccttgcatcc
accatacaggctgaagacccagactctgggcttaacggacaactcagctaccacatcacc
gacggaaacccttttggtctattctggttggatcgggctacaggccagctgtttgtgaac
accaccaatgctactgagctaattgggaaaacctttaagatgaacattgctgtgtctgac
atgggcagtcccagcctgaccaccaagtccactctggaggtgactttcattaatctcaag
gaccatctaaagaactcgtcaccaggtaaccgcggacagctcagcttcacaatgatgatg
gcgatctgcctgggtggcacctgcctactgcttctgtttgccattgctttggtgacaacg
ttctgccgcccagagaaacgagacagccgggcttacaactgcagacaagccgagtcaacc
tacaccagccacccgcggcggccacagaagaatatcaggaagtctgacatccagctaatt
cctgtcatcagaggccgaaaagaggagactgccgaggatgacagtgaagcccagccactc
gcaccgcctccaatgctgtcagacgatcaacaatctgagaggcagtataccttggcggca
tcagtcatgaacacgagcttccattcccaaggctaccaagaagtggatgccactcaaccc
gccacccaccactgcagaacacttaggaaacctgcaaacatcgaacttgatggcacttta
ccactgacgcccgctacttcttatcggactctacggaaagccaggaacccgtcatcctca
tcgtcttcggtttcccgttcgagcaccttgaagcgccagacccccgttgaaagggaggag
gcggagccgctgagttcagcatcacaggcgaccctcaggaggccgaggacatcggaggga
cgaggggggcccgatgccgaacatcggcagatgcttcgaaacctggtacgactgtccatg
gctgcgtttggagactccattgagctttcctcggcttccccagaagtgcagcagatctcc
cagctcctctctctcctccggcagggtcagctgcagccgaggcccaacttcagggggaat
aaatactcgcaccgcaacggcagccaaaaacagttcctccgcggcgcccggttggtcagc
tggttgagtgtgcgccccgtgtccagaagctcagtcctcgctgcagcagccgcggatctg
gtaaaagaaataaaaaataatagcagttcaaacatctctttctgtctttctgtctctgca
gacgacgtcttctcggaggtcagtgacccggcctggatggcccgactctctcttccactc
ggcgccgattaccacgacaatgtcttcgtccccaacgggcctccgtcccctgaaagcgag
gtcctcccccgggacgccctggactcctcgtccttctccaccttcggtaaaactccagag
aaggacggcccgctggggggggccctcctgtcggaggtcagcacgctgtttgagatgctg
atgacgcaaaaggccgacgcccaccccggcccgcgacccgacgtcctctaccgactctcc
gccgcctaccgccgctcgctgggcctggactgctccaccaacatggccgccggcggcaac
gcgccgaggaactctgggaacgccgagaagagggcgggcctggcggcgccctcgggactt
tatcaataa
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