Etheostoma cragini (Arkansas darter): 117951649
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Entry
117951649 CDS
T07493
Symbol
zgc:153681
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03008
Ribosome biogenesis in eukaryotes
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117951649 (zgc:153681)
03015 mRNA surveillance pathway
117951649 (zgc:153681)
03008 Ribosome biogenesis in eukaryotes
117951649 (zgc:153681)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117951649 (zgc:153681)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117951649 (zgc:153681)
03009 Ribosome biogenesis [BR:
ecra03009
]
117951649 (zgc:153681)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117951649 (zgc:153681)
mRNA cycle factors
Stress granule specific factors
117951649 (zgc:153681)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
117951649 (zgc:153681)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_9
LRR_8
Motif
Other DBs
NCBI-GeneID:
117951649
NCBI-ProteinID:
XP_034739333
LinkDB
All DBs
Position
10:18110805..18125731
Genome browser
AA seq
677 aa
AA seq
DB search
MVDIEKFPLMDRVSWSQRSYPNLAVVTRVFNDDRGDFMVKREVRSTGCMVLGEHDDRTAP
QFRNRKGRGSHKGRSYDRSRRDRQRGSHSGGFGPGPRSRLDDIDPDVTMSDSSQDSSSQH
RFNPYGRPFRKGGDGRFDRDRRQGKGGVGGRGGGGGFRGGDRGGGNGGGKSRSGWYKVTI
PHGRKYDKKWLLTALQNICSVPYAPVQYHVDHNRVHFYVDDSSAANALHKCSHKITDTDG
YKVEVHINPSAPPSFLLSDLKPEHFEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSQNIE
VILNRKTNMEAVIKIIEENIPELKGLNLSNNRIHKLDELADLVTKAPNLKTINLSHNELK
SDRELDKVKGLKLVELWLNRNPLCDLFKDQASYISAVRQRFPRLLKLDGHDLPPPIGFDV
ETPTTIPPCKGSCFGSDEIKVIILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYST
QNPSRSSLGEYHKDTRNLKRIKDSTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVN
TYTNTLLSFTVSGVFKEVVADGKSRESTMAFSRVFITVPAGNSGVCIVNDQLFIRMATTE
EIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFTRAAQI
FTQLKTDGKIPDVAFIK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggttgacattgaaaagtttcccctgatggatcgtgtgagttggtctcaaagaagctac
cccaacctagctgtggtgacacgtgtgtttaatgacgaccgaggggactttatggtgaag
agagaggtcaggagcactggttgcatggtccttggagagcacgatgatagaaccgcacca
cagtttcgcaaccgtaaaggcagaggctcacacaagggtcggtcgtatgacaggtcccgc
agagaccgccaacggggaagccactctggaggctttggtcctgggccacggtctaggctt
gacgatattgatccagatgtgactatgagtgacagctctcaggacagcagctcccagcac
agattcaacccatatggaagaccttttcggaaaggaggagatgggcgctttgatagagac
aggcgacaaggcaaagggggagtaggtggcagaggaggaggaggcggctttagaggagga
gacagaggtggaggcaatggaggagggaaaagccggtcgggctggtacaaagtaacgata
ccacatggaagaaaatatgacaaaaaatggttattgacagctcttcagaacatctgttcg
gttccctacgcacctgtacagtaccatgttgaccataacagggtccacttctatgtggat
gattcctctgctgccaatgctctgcataaatgttctcacaagattacagacacagatggt
tataaggtggaagtgcacatcaatcccagcgcgccaccatccttcctcctctctgaccta
aagccggaacactttgagcacctgaagcaatgcatggcaaaacgttttgatggctcccag
caagcactcgacttgaacaacatccgaacagacccagatctggtgtcccagaacattgaa
gtcattttaaataggaagacaaacatggaagctgtcatcaagatcattgaagaaaacatt
ccagagctgaagggtttgaacctgagcaacaatcgtattcacaaactggatgaacttgcg
gatttggttaccaaggcgcctaatctgaagaccatcaacctctctcacaatgagcttaag
tcagaccgggagctggacaaggtgaaaggcctgaagctggtggagctgtggctgaacagg
aacccgctgtgtgacctcttcaaggatcaggcctcgtacatcagtgctgtgcggcagagg
tttccccggcttctcaaactggatggtcatgacctccccccacccattggatttgatgtg
gaaacacccaccactatccccccctgcaagggaagctgttttggctccgatgaaatcaag
gtcattatccttcggttcttgcaacagtactacagtatatacgactccggggacagacag
ccactcctggatgcttaccatgatggagcatcgttatccctcacaacaccttactccacc
caaaacccctccaggagcagtctgggagagtatcacaaagacactcgaaacctaaagcgg
atcaaagactcaacaatgcggtttcgactgctgaagcacacacgactgaatgtggtggct
ttcctcaacgagttgcccaaaactcagcatgacatcgcctcgttcactgtcgacgtaaac
acctacacgaacacactgttatcgttcacagtgagcggagtcttcaaagaagttgttgct
gatggtaaatccagagagtccaccatggctttctctcgagttttcatcacagtcccagca
gggaattctggtgtgtgcatcgtgaacgaccagcttttcatccggatggccacaacagag
gagattcgccgagccttcgttgcccccgccccaactccctcttcgagccctgtccccacc
ctcactgcaccgcagcaggagatgctcacagccttctcgcaaaagtccggcatgaatctg
gaatggtcccaaaaatgtctgcaggacaatgagtgggattttaccagagcggcacaaatt
ttcactcagttaaagactgatggcaagatcccagacgttgcgttcataaaataa
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