Etheostoma cragini (Arkansas darter): 117951704
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Entry
117951704 CDS
T07493
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117951704 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117951704 (cnot6a)
Enzymes [BR:
ecra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117951704 (cnot6a)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117951704 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117951704 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
117951704
NCBI-ProteinID:
XP_034739435
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All DBs
Position
10:complement(14494902..14509701)
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHISD
NSLSRIPPDIAKLHNLVYLDLSSNKIRTLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRASALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAVFYRTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEASSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKSSMSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFGQLE
LLLPNLPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaattatgtctagc
gaagaagcagccaacgggaagaaatcatactgggctgagcttgaaatcagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacatcagtgac
aactcattgtcacgcatcccgccagacattgccaaactacacaacctagtgtacctggat
ctctcatccaataagatcaggaccctgccggcagagctcggcaacatggtctctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgatggcacgcggagactgctcaactacttattagacaatctggcaggggct
atcaagcgcataccaacagagcagcctccagcacggtcgtggatctcactccaagaacca
gaccgaacacgggcctcagccctgttctctgttatgtgctacaatgtgctgtgtgataaa
tatgccacacgacagctatatggctattgcccttcttgggctctaaactgggagtacagg
aagaaatccatcatgcaggagataatgggctgcaacgcagacatcatcagtttgcaggaa
gttgagacggagcagtactacaattttttcttgcctgagttgaaggagcagggatacgac
ggtttcttcagtccaaagtcacgagccaggaccatgtccgagtcggaccgtaaacatgtg
gacggttgtgcagttttctacaggacggaaaagttcagtgcagtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctcggaagctatgctgaacagggta
atgaccaaggacaacattggggtagctgtactgcttgaggttcgcaaagagatgatggag
gcctcatctggaaagtcactccatggcatggagaagcaactgctcctggtagccaatgcc
cacatgcactgggacccagagtactctgacgttaagctggtccagaccatgatgttcctg
tcagaggtgaagaacatagtggacaaggccacacgcagcctcaagttgtcctctgtctct
ggtgagaccaatgccattccactggtgctgtgtgccgacctcaactccttgcctgactct
ggcgtagtggagtacctgagtactggtggggtggactgcacccacaaggacttcaaggag
cttcgctatagcgacagcctgaccaaattcaactgcaatggcaagagcagcatgtccaac
ggcaggatcacccatggcttcaagctgaagagcgcttatgagaacggcctgatgccttac
accaactacaccttcgactttaagggtgtcatcgactatattttctactctaagcctcac
ctgaacgtgctgggtattttgggccctctggacccccactggcttgtagagaacaatgtc
agcggctgcccgcatccccacatcccctccgaccacttctccctcttcggccagctggag
ctgctcctgcccaacttgcccccacaggtcaatgggctccatctgcctgcacgcaggtag
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