Etheostoma cragini (Arkansas darter): 117951854 Help Entry 117951854         CDS       T07493                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ecra  Etheostoma cragini (Arkansas darter) Pathway ecra03040   Spliceosome ecra04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ecra00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     117951854 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     117951854 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ecra03041]     117951854 (prpf19)    04121 Ubiquitin system [BR:ecra04121]     117951854 (prpf19)    03400 DNA repair and recombination proteins [BR:ecra03400]     117951854 (prpf19) Enzymes [BR:ecra01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      117951854 (prpf19) Spliceosome [BR:ecra03041]  Complex B   Other components    Prp19 complex     117951854 (prpf19)  Complex C    Prp19-CDC5 complex     117951854 (prpf19) Ubiquitin system [BR:ecra04121]  Ubiquitin ligases (E3)   U-box type E3    117951854 (prpf19) DNA repair and recombination proteins [BR:ecra03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     117951854 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_IFT122_1st PEP5_VPS11_N Beta-prop_EIPR1 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SPT8 U-box Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_VPS8 PROPPIN Beta-prop_ACSF4 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Tricorn_2nd Cytochrom_D1 B-prop_COPA_B_2nd Ge1_WD40 ATG16 zf-Nse DUF2518 Motif Other DBs NCBI-GeneID:  117951854 NCBI-ProteinID:  XP_034739703 LinkDB All DBs Position 10:14878287..14883855 Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLIAPQAVPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK ATILTTERKKRGKTVPEELVRSEDLSKYRQVATHAGLHSASVPGILALDLCPSDTNKVLT GGADKNVVVFDKSEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDNTIRVWSVAGGNCV QVVRAHEGGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT GVAFGENAQFLTSAGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgtgcaatttccaacgaggtaccggagcacccgtgcgtctccccggta tccagccaggtgtttgagcgcaggctgatcgagaagtacatcgcagagaatgggaccgac ccgatgaacggacaacccctgtctgaggagcagctcgtagatatcaaagtgtcccatcct attagaccaaaggctccatcagcaacaagtattcctgctattctcaagtcccttcaggat gagtgggatgctgtaatgcttcacagcttcaccctgcggcaacagctacagactactcgc caagaactgtcccatgctctctaccaacatgatgctgcctgcagagtcatcgctcgactc accaaagaggtcactgctgcgagagaagctcttgccacactcaaaccccaggctggattg attgcccctcaggcagtccccgcctctcagccagccgcagcaggtgctggtggagagccc atggagattagtgaacaggtgggaatgaccccagagatcatccagaagctccaagacaaa gctactatcctcactacagaaagaaagaagagaggaaaaactgtcccagaggagctcgtt agatctgaggatctcagcaaataccgccaagtggccacgcatgctggtcttcatagtgcc agcgtccctggtattctggctctggatctgtgtccctcagacaccaacaaagttctcacc ggtggcgctgataagaacgtggtggtgtttgacaagagcgaggaacagattgttgcaaca cttaagggtcacaccaagaaggtcacctctgtcatttaccatccatcccagtctgtggtc ttttctgcatctccagacaacaccatccgtgtgtggtctgttgccgggggtaactgtgtc caggttgtgcgtgcccacgagggaggtgtcactggactctctctacacgctactggggac tacctgctcagctcctctgaggatcagtactgggccttttctgatatccagactgggcga gtcctcaccaaagttactgatgaaagtgctggctgtgctctaacttgtgctcagttccac cctgatggtcttatttttggcactgggacggctgattcccaaatcaagatctgggatctg aaggagcgcaccaacgtggccaacttcccaggccactctggccccgtcacctccattgct ttctctgagaacggatactatctggccacaggtgcccaggatagctctctgaaactgtgg gatttgaggaaactgaagaacttcaagaccatcactctggacaacaactatgaggtgaag tcccttgtgtttgaccagagtggaacctacctggctgttggagggtcggacattcgtgtg tacatctgcaaacagtggtctgaggtcctcaacttcacagaccatacaggattggtgacc ggagtggcctttggagagaacgctcagttcctcacctctgcaggaatggacagaagtctc aaattttacagtttgtag

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