Etheostoma cragini (Arkansas darter): 117951905
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Entry
117951905 CDS
T07493
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117951905
09122 Translation
03013 Nucleocytoplasmic transport
117951905
03015 mRNA surveillance pathway
117951905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117951905
03041 Spliceosome [BR:
ecra03041
]
117951905
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
117951905
Spliceosome [BR:
ecra03041
]
Common components
Common spliceosomal components
Cap binding complex
117951905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
RRN3
DUF1690
Vfa1
Apolipoprotein
AAA_11
Phage_Gp23
FapA
GBP_C
Motif
Other DBs
NCBI-GeneID:
117951905
NCBI-ProteinID:
XP_034739768
LinkDB
All DBs
Position
10:26420474..26430947
Genome browser
AA seq
797 aa
AA seq
DB search
MSRRRHSDSENEGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEA
DLPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNN
LYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPW
VGKELYEKKDVEMDRLLSQIEGYLKGRGKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKL
KKDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPRVVFRMFDYTDAPE
GPVMPGSHSVERFVIEENLHCIIQTHWRERKTCAAQLLSYPGKNKIPLNYHIVEVIFGEL
FQLPSPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTSCVDRLINWFSH
HLSNFQFRWSWDDWSDCLTMDLEKPKPKFVKEVLEKSMRLSYHQRIVDIVPPTFSALIPA
EPIFSYKYEDESASSLPGYQASVTVGNAIKNRASNEEILNILKEVPNPNQEDDDDEGESF
NPLKVDVFLQTLLHLAAKSFSHSFSALGKFHEILKALTESDEGKLHILKVVYDVWRNHPQ
MIAVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFIWEILHSTIRKMDKHVQRIQQEL
EEAKDKLEKQQHKRQKDSGDDEDMDKNSEDEEGQLEEQIERLQEKVESAQSEQKNLFLVI
FQRFIMLLTEHLVRCETGSVDITTPWYKNCVERLQQVFLMHHVTIQQYMGTLENLLFTAE
LDHHILAVYQQFCALQL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggagacgacacagcgacagcgaaaatgagggaggtcaggcacataaaaggcgg
agaacgtctgagcccattgaaattgaagaccgcctggagtcactgatatgtcgtgtagga
gagaagagtacatcgtccttggagagcaacttggagggcctcgcaggcgtgctggaggct
gaccttccgaactataaaaacaaaatcttgcgcattttatgtgctgttgctcgcctccta
cccgagaagctgaccgtgtatacgactttagttggcctcttgaatgccaggaactacaac
tttgggggcgagtttgtagaggccatgatcagacaactcaaggaaacactaaaaaacaac
ttatacaatgaagctgtttacttggtgcgtttcctgtccgacctggttaactgccatgtg
attgctgctccttcaatggtggccatgtttgaaaactttgtcagtgttactcaggaggaa
gatgtaccacaggtgcggtcggactggtttgtgtatgtggtgctgtcctgtctgccctgg
gtcggtaaggagctttacgagaaaaaggatgttgagatggaccgacttctcagccagatc
gaaggctacctcaaggggcgaggcaagacacatgtccccatgctgcaggtgtggacggca
gagaagcctcacccacaggaggagtacctggactgcctttgggcccagattcagaagcta
aagaaagaccgctggcaggagcgccacatccttcgtccatacattgcctttgacagcgta
ctctgtgaggccctgcaacacaacctgccccccttcactccaccgggccacatgcccgac
gcccagtaccccatgccccgggtcgtcttccgtatgttcgactacaccgatgccccagag
ggtcccgtgatgcccggcagtcattcggtggagagatttgtcatagaagaaaacctgcac
tgtatcatccagactcactggagagagaggaaaacatgtgctgcccaattacttagctat
ccagggaaaaataagatcccgctcaactatcacattgtggaggtgatctttggggaactt
ttccagctgccatctccccctcacatcgacgtcatgtacaccacactgcttattgaactg
tgcaaactgcagcccggatcattgccacaagttttggcccaagccacagagatgctgtac
atgagactggacaccatgaacaccagctgcgtagacagactaatcaactggttctctcat
catttgagcaacttccagtttcgatggagctgggatgactggtctgactgcttgaccatg
gatctggagaagcccaagcccaagtttgtcaaagaggttctggagaagagtatgagactt
tcataccaccagcggatagtggacatcgtccctccaaccttctcagcactcatcccagcc
gaacccatctttagttacaaatacgaagacgagagcgcttcttcgttacccggttaccaa
gcatcggtcactgttgggaacgccattaagaaccgagcgtccaacgaagagatcctaaac
atcctcaaagaagtgcccaaccccaaccaagaagacgatgacgatgagggcgagagcttc
aaccctctgaaggtggatgtgttcctgcagactctgctccacctggcagccaaatccttc
agccactccttcagtgccctcggcaagttccatgagatcttgaaggccctgacggagagc
gacgaggggaagctgcacatcctcaaggtggtttatgacgtgtggagaaatcacccgcag
atgatcgcagtgttggtggacaaaatgattcggacgcagatcgtggactgcgccgctgtg
gccaactggctcttctctcaggacatggctcatgagttcaccagacttttcatctgggag
attcttcactcgaccatccggaaaatggacaaacacgtccagaggatccagcaggagttg
gaggaggccaaggacaaactggagaaacagcagcataagaggcagaaggacagcggggac
gacgaggacatggacaagaacagcgaggacgaggagggccagttggaggagcagatcgag
aggctacaggagaaggtggagtcggctcagagcgaacagaagaacctcttcctcgtcatc
ttccagcgcttcatcatgttgttgacggagcatctggttcgctgtgagacgggcagcgtc
gacatcaccacgccctggtacaagaactgtgtcgagcggctgcagcaggtctttctcatg
caccatgttaccatccagcagtacatgggaaccctggagaacctgctgttcaccgccgag
ctcgaccaccacatcctggccgtgtaccagcagttctgtgccctccagctctga
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