Etheostoma cragini (Arkansas darter): 117952502
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Entry
117952502 CDS
T07493
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117952502 (col18a1a)
00535 Proteoglycans [BR:
ecra00535
]
117952502 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117952502 (col18a1a)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117952502 (col18a1a)
Proteoglycans [BR:
ecra00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117952502 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117952502 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
117952502
NCBI-ProteinID:
XP_034740743
LinkDB
All DBs
Position
11:24038087..24132818
Genome browser
AA seq
1665 aa
AA seq
DB search
MSNRRDEGHNLGSTKSEQHLDLSCNTPNNTRGNRKLKSSSWKANDLNLTNYSHDNSTPED
LLTPSIGNNLVETTPVPKDNQLVNASQLLAGELAANQEALLNQVSQTTQASFVSQALSTT
QTPRTSSQKTLITQAQPASKRPDTTLRPIAAHPQASSQASVTSQKVLTSQIDHILDGSHT
SVSELSQATLISPTAVGRLAPAESHTESPQCLLLDTVLPFCSSMVGERFVVPNYLNQTTV
EEVQVLLNEWAWLLKSSCHHSLEWFFCLLLVPKCGSLVTLAVLPCRSFCEVLRDSCWTLL
DEGRLPLECQTLPDEEDDGYTCLSVSNQKEDSGVSLLQLIGDPPPSTISQVFGPDNSPAF
VFGPDANTGQLARAHLPSPFYRDFALIFNLKPTSDRGGVIFSVTDSAQQIMYVGVKLSAV
QGSNQNVILYYTEPGSQQSYKAASFQVPSMRDTWTRFAIAVRDDKVMFYLNCDTADPQVM
RLERSPDEMELEAGAGVFVGQAGGADPMKFLGVMGELRLVGDPRAAERHCEEDDDDSDVA
SGEGSGYEETRPPKPAVEKHGWTTTPPSSRSIQQPPLTRVDEPSLARETASDSQHISLES
GPGLPGSPGPVGAKGEKGDRGDTGAKGDRGPIGPKGDAGSGSGSRGGARGDKGEPGEKGS
KGSAGFGYQGKKGEPGPSGAPGPPGPPGPATEFSVGADGSVAPRVPGPRGPAGPQGAAGP
QGPAGVDGEPGDPGEDGKTGPDGPAGFPGTPGDPGAKGEKGERGEGQPGPRGPPGPPGPP
GPGLRSTFVDMEGSAFPDLESVRGLPGLPGPPGPPGPPGPSTVGAGTASSSGAFGPPGKD
GAPGQPGLPGLPGTDGRPGVPGPKGDKGDLGELGLPGAVGEKGSRGDPGLPGTPGERGLA
GLPGPMGPVGPSGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGVRGPEGRQGSPGMPGLPG
KAGLPGITGQKGSDGAVGKDGRPGLDGFPGPQGPKGSSGNKGDRGDPGRDGTGIPGPPGP
PGPPGQIVYQTSGNVVGNAGPQGGPGLPGQAGFPGPIGPKGDRGDAGLPGYGVKGEKGEP
GLIIGPDGNLLHLEGLTGLKGDRGPPGPVGLTGPYGPPGLKGEIGMPGRPGRPGVNGYKG
EKGEAGVGSGYNYPGPVPGPPGPPGPPGPPGPAVPFDRFNRYDDISRNYPATKGEKGEQG
NRGLPGTASNFDIYTFKNELKGERGDSGVKGEKGEPGGGYYDPRFGGVQGPPGPPGKPGL
QGPKGESITGPPGPQGPPGSPGIGYDGRPGPPGPPGPPGSLPGGYRPNQSVSVPGPPGPP
GAPGIPGHSSGVTVLRSYDTMIATARRQAEGSLIYIIDKADLYLRVQDGLRQVMLGDYSP
FFRDLDNELAELQPPPVILYPQDRTQNNGAGHYSQGSSGIRPIEPPPQPAVDPRYPPQYD
PRFPDPRLTGQTDGRPATQWTENRYPVTPQRRPSPPVLQPAGRSDPSASGLHLIALNAPQ
TGNMRGIRGADFLCFQQARAIGLKGTFRAFLSSKLQDLYTIVRRSDRDSVPIVNLKDQVL
FSSWQSLFDDEANKMRENVPIYSFDGRDTLRDSAWPEKMVWHGSSNKGHRQTDDYCETWR
AGDPAVTGLASSLQSRHLLQQTSSSCSGSYIVLCIENASTTYSKK
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacagaagagatgagggccataatcttggtagcacaaaatcagagcaacattta
gatttatcttgcaacacccccaataacacaagaggaaatagaaaacttaaaagtagtagt
tggaaagccaatgacttaaatttgacaaattattctcatgacaactctaccccagaagat
ttactaaccccaagtataggcaacaacttggtagagactaccccggtacctaaggacaac
caactagtgaatgcttctcagttactagctggtgaattagcagctaaccaggaagcttta
ctcaaccaagtgtcacagactacacaagcttcatttgttagccaggcactttctacaacc
caaacacccagaactagtagccaaaaaacgttaattacccaagcgcaaccagctagcaag
agacctgacactaccttaagacccattgctgcccatcctcaagcatccagccaagcatca
gtgactagccaaaaagtgttgaccagccaaattgatcacatcttagatggttctcacaca
tcagtaagtgagcttagccaagcaaccttaattagcccgacagctgtaggtaggttggca
ccagctgagagccacacagaatcccctcaatgcttgttgctagatactgttctccctttc
tgctcctccatggttggggaaaggtttgttgtgcccaattacctcaaccaaaccactgtg
gaggaagtccaggtacttctaaatgaatgggcatggctgttgaagtcatcttgtcaccat
agtttggagtggtttttctgccttctcttggtaccaaagtgtggctctcttgtgacgctg
gcggtgttgccttgccggagtttctgcgaagtattgcgggacagttgctggacacttctg
gatgagggacgactccctttagagtgccagactctaccagacgaggaggatgatgggtat
acgtgcttgtcagttagtaaccagaaagaagacagtggtgtctccctgctacagctgatt
ggggatcctcctcctagtacgatcagccaggttttcgggcccgacaacagccctgccttt
gtctttggccccgatgccaacacaggccagctggcccgcgcccacctgccaagccccttc
taccgagattttgccctcatcttcaatctaaaacccacctctgacaggggcggtgtcatc
ttctccgtcacagactccgcacagcagataatgtacgtgggtgttaagctgtctgctgtt
cagggcagcaaccagaacgtcatcctgtactacacggagcccggctcccagcagtcgtac
aaggcggccagcttccaggtgccctccatgagggatacctggacccgttttgccatcgct
gtgagggacgacaaggtgatgttctacctcaactgtgacacagcagaccctcaggtgatg
cgccttgagaggtcaccggatgagatggagctggaggccggcgctggggtctttgtcggc
caagctggaggagccgatcccatgaagtttctgggtgtgatgggtgagctgaggctggtg
ggagacccccgtgctgctgagaggcactgtgaagaggatgacgatgactcggatgtggcc
tcaggtgaaggaagtggctatgaggaaaccagaccccccaaaccagccgtggagaagcat
ggatggacgacgacacctccgtcttcccgatccattcagcagccaccactgaccagggtg
gacgagccgtcattagcaagagaaacagcaagcgactcccagcacatttctctggagtct
gggcccggacttcctgggtcaccagggccagtgggggctaaaggagaaaagggtgaccgg
ggggatacaggagcgaaaggagacaggggtccaatagggccgaagggggatgctggctcg
ggttctggctcacggggtggagcccgtggagacaagggagaaccaggggaaaagggatca
aagggcagtgcaggctttggctaccaaggaaagaagggagagcctggcccctctggggcc
cccggcccccctggccctccagggcctgcaacagagttttcagttggtgctgacggctcg
gttgctccaagagtcccgggaccccgaggaccagctggaccgcaaggtgccgcgggcccc
cagggaccagcaggcgttgatggagagccaggcgatccaggggaggacggaaaaactggt
cctgatggacctgctggcttccctggaaccccgggggaccctggagctaaaggagagaag
ggagagcgtggagagggtcagccgggccccaggggccccccaggacctccgggaccccca
ggaccaggactcagatctacctttgtggacatggaaggctcagcgtttcctgatctggag
tctgttcggggactgcctggcctaccaggtccccctggtccccccggtcctcctggtccc
tctacggtaggagcaggcacggcatccagttctggggcatttgggccaccagggaaggat
ggagcgcccggtcaacctggcttgcctggtttgccgggtactgatggccgcccaggagtg
cctggtcccaagggagataagggggatttaggcgagctgggtcttccaggagccgttgga
gagaagggatctagaggagaccctggtctaccaggaactccaggagagcgcggactggct
ggtctgcctggacctatgggacctgttgggccatctgggcctcccgggcctcctggacca
agctatcgggttggatttgatgacatggagggctctggtggaggtttcagcaatggactg
cctggcgtcagaggacctgaaggaagacagggttctcctggcatgcctggacttccgggt
aaagctgggttgcctggtataacaggtcagaagggcagtgacggtgctgtaggaaaagat
ggccgaccagggctggatggcttccccggacctcagggaccaaagggtagcagtggcaac
aaaggagacaggggtgacccaggtcgggatggaactggaatcccaggtccacccggtcca
cccggtccacctggacaaattgtctaccaaacatctggcaatgttgttggcaatgctggg
cctcagggaggacctggtttacctggtcaagctggattccctggtcctattggaccaaag
ggtgaccgaggagacgccggcctcccgggctacggagtgaagggtgagaaaggtgaacca
ggcttaataatcggaccggacggaaatcttctccacctggaagggctgacgggtctgaag
ggagacagaggacctccaggacctgttggcctcactggaccgtatgggcctcctggatta
aagggtgaaattggaatgcccggaagacctggtcgccccggtgtaaatgggtacaagggt
gagaaaggggaggcgggagttggatctggctacaactacccaggtccagtccctggccca
ccaggaccaccgggaccacccggaccccccgggccggccgttcctttcgatcgcttcaac
cgctatgatgacatttcaaggaactacccagcaactaaaggagaaaaaggagagcagggt
aaccgaggacttccaggaacggcctctaattttgatatttacacattcaagaatgaactg
aagggggagcgtggagactcaggtgtgaagggagaaaagggagagcctggtggtggatat
tatgacccacgttttggaggagtgcaaggcccaccagggcctcctggcaaaccaggccta
cagggcccaaagggagaatccataacaggccctcctggaccccaggggccaccagggtca
ccagggattggttatgatgggcgtccaggtcctccaggaccacccggacctccaggatca
cttcccgggggatataggcccaatcaatctgtcagtgttcctggacctcccggtcctcct
ggtgcacctggaataccaggtcactcctctggggttactgttttgaggtcctacgacacg
atgatagctacagccagacggcaggcggagggcagcctcatctacatcatagacaaagct
gacctgtatttgagagtacaagatggactgcgccaagtgatgcttggagattacagtccg
ttcttcagagatctggacaacgaattggcagagctgcagcctccccctgtgatcctgtac
ccccaggaccggacccagaacaacggagctggccattactcccagggcagttccgggata
cgacccatcgagcctccaccacagccagctgtagaccccaggtaccccccacagtatgat
ccaagatttccagacccaaggctcactggtcagacggatggaaggccggccacccaatgg
accgagaacagataccctgtaactccgcagcgacgacccagcccacctgtactgcagcct
gctggccgctcggacccgtcggcatcaggactacatctcatcgccttgaacgcccctcaa
actggcaacatgcgaggaattcgcggggcggacttcctttgcttccagcaggcccgcgcc
ataggcctgaagggaaccttcagagctttcctgtcctccaagcttcaagacctctatacc
atcgtccgcaggtcggacagggacagtgtccccatcgtcaacctcaaggaccaagtgttg
tttagcagttggcagtcactcttcgacgacgaggcaaacaaaatgagggagaatgtgcca
atctactccttcgacggtagagacaccctcagggacagcgcgtggccagagaaaatggtc
tggcacggctcaagcaacaagggtcaccggcaaacggacgactactgcgaaacatggcgg
gcgggcgaccccgctgtgaccggtctggcatcatccctacagagcagacacctcctgcag
cagacatccagcagctgctcgggctcctacatcgtcctctgcatcgagaatgcctcgacg
acgtactccaaaaaataa
DBGET
integrated database retrieval system
