Etheostoma cragini (Arkansas darter): 117952899
Help
Entry
117952899 CDS
T07493
Symbol
si:ch211-214p13.3
Name
(RefSeq) nectin-1
KO
K06081
poliovirus receptor-related protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03266
Virion - Herpesvirus
ecra04514
Cell adhesion molecule (CAM) interaction
ecra04517
IgSF CAM signaling
ecra04520
Adherens junction
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
117952899 (si:ch211-214p13.3)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117952899 (si:ch211-214p13.3)
04517 IgSF CAM signaling
117952899 (si:ch211-214p13.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117952899 (si:ch211-214p13.3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117952899 (si:ch211-214p13.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117952899 (si:ch211-214p13.3)
04090 CD molecules [BR:
ecra04090
]
117952899 (si:ch211-214p13.3)
Cell adhesion molecules [BR:
ecra04515
]
Immunoglobulin superfamily
Nectin family
117952899 (si:ch211-214p13.3)
CD molecules [BR:
ecra04090
]
Proteins
117952899 (si:ch211-214p13.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
ig
I-set
V-set
Ig_2
C2-set_2
Ig_4
C1-set
Motif
Other DBs
NCBI-GeneID:
117952899
NCBI-ProteinID:
XP_034741395
LinkDB
All DBs
Position
11:12652827..12677013
Genome browser
AA seq
431 aa
AA seq
DB search
MKCFFNLHRVCVGYLVTAVRADCAAAAGCILSKPMTTRWTSCFSRTNTLLLLAFTLILST
DIEALQVIGGNITVVQGETAILPCKLIDTTEHLTQISWQKTTRGKPKNVNFFTVLDVDGP
QFVNGHDDRFKFIGNFKENIATLQLSNVKLMDEGTYTCIFTLFPSGNHKTDIPLNLLVPP
VSSLEDNHPTLGNEEVSLVTCIAASSKPPALVRWLVGTLAETVRETTNFTQHANGTTTTT
SSLFGVPTKEVNSHSVQCVVTSAAMLVEETLSFDIQVYFSPTDVKISERSKGSLECVTEA
NPNADFTWSRKNQLWPQLAVKVDGGTLQFQSMTSDLNGLYQCEASNRYGKKHSYLYVHVT
DASITGWILFGLLLIVLLLIALVAAVWYFYSSGRFTRTGEHTRRGREKVPTTCNPPERPQ
RVEEEAVEESL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtttttttaatttgcatcgcgtttgtgtaggctacttggttactgcagtcagg
gctgactgcgcagcagctgctggatgtattctaagcaaacccatgacaacaagatggaca
tcgtgtttctccagaaccaacactctgctattattggcatttacactgattctgagtacg
gatatagaagctctccaggtcattggaggaaacataaccgttgtgcaaggagagaccgcc
atcttaccttgcaaactcatcgacaccacggagcacctaacccagatttcatggcagaag
acgaccagaggaaaacctaaaaatgttaatttctttacggtcttggacgtagatggacca
cagtttgtcaacggacatgatgatcgatttaaatttatcgggaactttaaagaaaacatt
gcaaccctgcagttatccaatgtcaaattgatggatgaaggcacctacacgtgtatcttt
actttgttccccagtggaaatcacaagacagacatacctctaaacttacttgtgcctccg
gtctcaagcctggaggataatcatcctactttgggaaatgaagaagtttccctcgtcact
tgcatagctgctagttccaagcctcctgcactggtaaggtggcttgtgggtactctggca
gaaacagtgagggaaaccaccaacttcacccagcatgccaacggtacaactaccacaacc
agctcgctgtttggagtacctaccaaagaagtcaacagtcattctgtccagtgcgtcgtc
accagtgcagccatgttggtagaagaaaccctgtccttcgacatacaggtctacttttcc
cccactgatgtgaagatcagtgaaagatctaaaggctcattagaatgtgtgactgaagcc
aacccaaatgcggactttacctggagcagaaagaaccagttgtggcctcagttggctgtc
aaagtagatggtggaacactacagtttcagagtatgacctctgacctcaatggcctctac
cagtgtgaagcaagtaaccgttatggaaaaaaacatagttacctctatgtgcatgtgaca
gatgccagcattactggttggatcttatttggtcttttactgattgttcttttgctgatt
gcccttgttgctgcggtttggtacttttatagctctgggagatttacaaggacaggagag
cacacacgcagggggagggaaaaggtcccaacaacttgcaacccacccgaaaggcctcaa
agagtagaagaggaagcagtagaggaatctctttga
DBGET
integrated database retrieval system
