Etheostoma cragini (Arkansas darter): 117953084
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Entry
117953084 CDS
T07493
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117953084 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117953084 (sf3b1)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117953084 (sf3b1)
Spliceosome [BR:
ecra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117953084 (sf3b1)
Complex B
117953084 (sf3b1)
Complex C
U2 SnRNP specific factors
117953084 (sf3b1)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117953084 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
Menin
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
117953084
NCBI-ProteinID:
XP_034741715
LinkDB
All DBs
Position
11:4806565..4820377
Genome browser
AA seq
1320 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDEEEDSTTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPPKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAAAAAKRKRRWDQTADQTPTNTTPKKISTWDQADSSSETPGHTPGHTP
AHTPSSTRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGA
TGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPAS
QMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDEL
DAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNL
PFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAR
EFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLID
EDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSL
LPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTI
SALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANY
YTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMA
LDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADI
DHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKS
AKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI
GMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLE
LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS
PFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH
RQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPC
RMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYVRYELDYVL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggctaccctgctggaggagggagatcagggggtgggcctggactccactggcttt
tttgaccaggagatctatggaggcagcgacagccgttttgctggttatgtcacttcaatc
gccgctaatgaacaggaggaagatgaagaagaggactcaacaacaagcttgttgggacaa
aagaagccagggtaccacgcaccagtggcgatactcaatgccattcctcagtcagacgag
caatacgacccatttgcggagcatcgtccaccaaagatcgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcaccagagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaagtcaggtcgtacgtggacgtcatgttggagcag
aacctgtcaaaagaggagagagagattcgtcagcaactggcagagaaggccaaatctggg
gacctgaaagctgtcaacgggtccgctgcctcacaagccgctgctgccgcaaaacgtaaa
cgtcgatgggaccagacagctgaccaaaccccaactaatactactcccaaaaagatctcc
acctgggaccaggccgactcctcctctgagactccaggacacactcctggacacaccccc
gcacacacaccttcaagcacccgatgggatgaaacccctggccgccccaaaggcagcgag
accccgggggctactcccagtacccgcatgtgggaccccactcccagccacacacctgct
ggcgctgccacccctggcagggacacgcccggccatgccacgcccggtcatggtggtgcc
acaggaagcgtacggaagaaccgctgggacgaaaccccaaagacagaaagggagaccccg
ggacacgggagtggctgggcagaaacgccacgcacagacagaggagatgagtctgtgggc
gagactccgaccccaggggccagtaagaggaagtctcggtgggacgaaacccctgccagt
caaatgggttcctcaacaccactacttaccccaggaaaaacgcccataggcacgccagct
atgaacatggctaccccgacaccaggtcacctgatgagcatgactccagagcagctgcag
gcgtggaggtgggagagagagattgatgagaggaaccggcctctcacagacgacgagctt
gatgccatgttcccagagggatataaggtcttgcctccaccagcaggctacgtgccgatc
cgaactccggcccgtaaactgtcggccacgcctacgcccattggaggcatgacgggcttc
cacatgcaagtggaggaccgcaccacgaagcagatgaatgaccagccctcaggaaacctc
cccttcctcaaaccggatgacatccaatattttgacaaactgctggttgaggtggacgaa
tccacgctgagccctgaggagcagaaagagaggaagatcatgaagttgctgctgaaaatt
aaaaacggaacaccgcccatgagaaaggccgctctgcgtcagatcacagataaagctcgt
gagtttggagcaggccccctgttcaatcagatcctgccattactcatgtcgcccaccctg
gaggaccaggagcgccatctgctggttaaagtcattgaccgcattctctacaaactggat
gacctggttcgaccatacgtacacaagatcctggtggtgattgagcccttgctgattgat
gaggactactatgccagagtagaaggcagagaaatcatctccaatttggcaaaggctgcc
ggtttggctacgatgatctcaacaatgcgacccgatatcgacaacatggacgagtacgtc
agaaacaccacagcccgagcctttgccgtggtggcctctgctcttggtattccctctctc
ctgccgtttctcaaagctgtatgtaaaagcaagaagtcctggcaggccaggcacacgggc
atcaagatcgtgcagcagattgccatcctcatgggctgcgcaattctgccccacctgcgc
agcttggtggagatcatcgaacacggtctggtggacgagcagcagaaggtgaggaccatc
agtgccctggctatagctgccctcgctgaagctgctacgccctacggtatcgaatccttt
gactcggtcctcaagccgctctggaagggtatcagacagcacagaggaaagggtctggct
gcttttctgaaagctattggttacctgatcccactgatggacgccgagtatgcaaactac
tacaccagagaggtgatgcttatcctcatcagggagttccagtcccctgacgaggagatg
aagaagattgtactcaaggtggtgaagcagtgttgtggcactgacggtgtggaagccaac
tacattaagacagagattctgccccccttcttcaagcacttctggcagcacaggatggct
ctggacagacgcaactacagacagttggtggacaccaccgtggagctggccaacaaagtg
ggtgcagcagagatcatttcgcgaattgttgatgacctgaaagatgaggcagagcagtac
agaaagatggtgatggagaccatcgagaagatcatgggcaacctgggtgcagctgacatc
gaccacaagctggaggagcagttgatcgacggtatcctgtatgccttccaggaacagaca
acagaggactctgtgatgcttaatggttttggcacagtggtgaacgccctcgggaagcgt
gtgaaaccctacctgccgcagatctgtggtacggtgctgtggcgtctcaacaacaagtcc
gccaaagtccgtcagcaggctgccgacctgatctcccgtacagccgtggtcatgaagact
tgccaggaggaaaagctgatgggtcacttgggagtggtgctgtacgagtacctgggagag
gagtacccggaggtgttgggtagcatcctgggagcgttgaaggccatcgttaacgttatc
ggtatgcacaagatgactccgccaatcaaagacctgcttcctcgtttgactcccatcctg
aagaacagacatgagaaagtgcaagagaactgtatcgacctggtgggcaggatcgctgac
aggggtgctgaatatgtgtcagccagagagtggatgaggatttgttttgaactgctggag
ttgctgaaggctcacaaaaaggccatccgcagagctactgtcaacacgtttggttacatt
gctaaagccatcggccctcacgatgtcttggccacgctgctcaataaccttaaggtccag
gagcgtcagaacagagtctgcacgaccgtggccatcgccatcgtcgctgagacctgttca
ccgttcactgtgctgccggcgctcatgaacgaataccgtgtgcctgagctcaatgtgcag
aacggcgtgctcaagtccctctccttccttttcgagtacatcggagagatgggcaaagac
tacatctacgccgtcacaccgctgctggaggacgcactcatggacagagacctggtccac
cgacagacagccagcgccgtggtccagcacatgtctttgggcgtctacggtttcggctgt
gaagactccctcaaccacttgcttaactacgtgtggcccaacgtgtttgagacgtcgcct
catgtgatccaggcggttatgggcgccctggaggggctgagggtcgccatcgggccctgc
cgcatgctgcagtactgcttacagggcttgttccatccggccaggaaggtgcgagacgtc
tactggaagatttacaactccatttacatcggctcacaggacgccctcatcgctcactac
ccacaagtctacaacgacgagaaaaacatgtacgtccgctacgaactagattacgtcttg
taa
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