Etheostoma cragini (Arkansas darter): 117953096
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Entry
117953096 CDS
T07493
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117953096 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117953096 (ddx3xa)
03041 Spliceosome [BR:
ecra03041
]
117953096 (ddx3xa)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117953096 (ddx3xa)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117953096 (ddx3xa)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117953096 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
117953096 (ddx3xa)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117953096 (ddx3xa)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117953096 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
APC_u13
Motif
Other DBs
NCBI-GeneID:
117953096
NCBI-ProteinID:
XP_034741758
LinkDB
All DBs
Position
11:3410156..3429364
Genome browser
AA seq
741 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPKNAGNAYSAGRQYG
YSMAPVNLYSPGWDGGRTNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNGGGGSFN
QQLQNAGFGGEGNWGGAPRDAAYNSFGGRNDQRSKSTFFNERGAGSRGRYERGGFSSGGN
NRWSEESREEDWSKLSPPNERLENELFSASNTGINFEKYDDIPVDATGNNCPPHIESFHD
VDMGEIVMANIGLSRYDCPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYQ
EGPGDALQAAKSSGQDNGRYGRRKQYPIALVLAPTRELALQIYDEARKFAYRSRLRPCVV
YGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNFLILDEADRMLDMGFEPQ
IRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVV
WVEDGDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKESLTLVFVETKKGADALEDFLYH
EGYSCTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIE
EYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKST
TRGRSKRFSGGFGARDYRQTPGGSANSFSSNRGGGGGGRSAGGHGGGNRGFGGGSFGGNF
YGNDGYGGNYSHSGSVDWWGN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactccgctgacggacaaggcggaggaactggcaggcgttacattccacctcacttg
agaaacaaagatgcaccaaaaaacgcaggaaatgcttattccgctggtagacagtacggt
tattcaatggcaccagtaaatctctattcccctggatgggacggtggacgcaccaatgga
tttgtgaatgggtaccacgacaaccgcacaaatgggggatttggagggcgaggaccccct
cgcaatgatagaggtgggcgtggcgcctaccgtggtaacgggggtggaggctcgtttaat
caacaattacaaaatgcaggatttggtggtgaaggcaactggggaggagctcctagggat
gctgcatacaacagctttggcggacgtaacgatcaaaggtcaaagtccaccttcttcaat
gaacgtggagcgggctcaaggggaagatatgagcgtgggggcttttctagtggaggaaac
aaccgctggtcagaagaatccagagaggaagattggtccaagctctctcctcccaacgag
cgcctggaaaatgagcttttctctgcaagcaacacggggataaactttgagaagtatgat
gatattcccgtggatgccactggaaacaactgcccgccacacattgaaagcttccatgat
gtggacatgggggagattgtcatggcgaacatcggcctgagtcgctacgattgtcccact
ccagttcagaagcatgctatccccatcatcaagtccaagagagacctgatggcctgcgcc
cagactggctccggtaagactgccgctttcttgctgccagtgctgagtcagatctaccaa
gaggggccaggagacgctctgcaggccgccaagagctcaggacaggacaacggaaggtat
ggccgccgtaagcagtacccaatcgctctggtcctggctcccaccagagagctggctctg
cagatctacgatgaggccagaaagtttgcctatcgctcacgtctgcgtccctgcgtggtg
tatggcggtgcggatattggtcagcagatcagggagttggagagaggctgtcacctgctg
gtggccacacctggacgtctggttgacatgatggagaggggaaagattggtctcgactac
tgcaacttcttgatcctggacgaggccgaccgcatgttggacatgggttttgagccacag
atcagacgcatcgtggagcaggatacgatgccgcctaaaggcatccgtcagaccatgatg
ttcagtgccactttccccaaggagatccagatcctggctcgtgacttcctggaggactac
atcttcctggcagtgggcagagttggatccacttcagaaaacatcacccagaaggtggtc
tgggtggaggacggggacaagaggtccttccttcttgacctgctcaatgccacagttatt
cccagtgaggttcaggaaaatgtgacagaggcaccagagaaaccaggcaaagaatcgttg
actctggtgtttgtggaaaccaaaaaaggcgccgatgctctagaagatttcctttaccac
gagggttattcctgcaccagcatccacggagaccggtcccagagagacagagaggaagct
ctgcatcagttccgatcaggacgctgccccatcttggtggctacagctgtggccgccaga
ggtctggacatcagcaacgtgaaacatgtcattaactttgatttgcccagtgacattgag
gaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggtctggccacgtcg
ttctttaacgacaaaaacagcaacataaccaaagatttgctggacattttggtggaggcc
aagcaagaggttccctcctggcttgaaagcctagcctacgagcaccagcacaagagcacc
acacgcggacgctctaagaggttctctggtggattcggagctagagactaccgtcagacc
cccggtggctctgcaaacagcttcagtagcaaccggggtggaggtggtggtgggcgtagc
gctggaggccacggaggaggaaaccgtggctttggaggagggagctttggtggcaacttc
tacggcaacgacggctacggaggaaactacagccactccgggagtgtggattggtggggc
aactag
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