Etheostoma cragini (Arkansas darter): 117953285
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Entry
117953285 CDS
T07493
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ecra03037
]
117953285 (ift88)
Cilium and associated proteins [BR:
ecra03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
117953285 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_7
TPR_19
TPR_6
TPR_14
TPR_16
TPR_11
ANAPC3
TPR_9
SNAP
TPR_10
TPR_17
TPR_CcmH_CycH
ARM_TT21_5th
TPR-S
ARM_TT21_4th
MIT
ARM_TT21_C
HAT_PRP39_C
ARM_TT21_2nd
TPR_MalT
ARM_TT21
Consortin_N
RNPP_C
SHPRH_helical-1st
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
117953285
NCBI-ProteinID:
XP_034742042
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All DBs
Position
11:complement(6950497..6968581)
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AA seq
866 aa
AA seq
DB search
MENVHLAGEEEDLYSGYNDYNPTFDSEELENDLGFQQAVRTSYGRRPPMTAKFPGTAIGA
RPLASSFGARIPLASSLGRPMTGAVQDGAARPMTAVRAAGYTSSLTRGSTFDPLGQSKGP
APSLEAKNEDTPEEKIKILEKKVNDLIEESCMAQSIGALQLALEKAKEAGRKERALVRQR
EQSGNADHINLDLTYSVLLNLANQYANNEMYPEALNSYQVIVKNKMFNNAGRLKVNMANI
YVKQKNYPKAIKFYRMALDQISNAHKEMRIKIMQNIGVVFVRMGQYSDAITSFEHIMSES
PNIKTGFNLILCYYAIGDRERMKKAFQKLISVPLGIDDEDKYIPANDDTDSSMVIDAIKN
DKLHQMERDLKLLAEKYIMTAAKLIAPAIESSFATGFDWCVDMVKNSQYVELANDLEINK
AITYLRQKDFNQVEAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMTA
DRYNPAALINKGNTVFVKQDYEKAAEFYKEALRNDSSCTEALYNLGLTYKKLNRLEEALD
CFLKLHAILRNSAQVMYQLANLYELLEDPQQAIEWLIQVLSVTHTDPQALAKLGELYDGE
GDKSQAFQYYYESFRYFPSNIDVIEWLGAYYIETQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKEIHRKFPENVECLRFLVRLCTDMGLKEVQEYATKLKKAEKM
KEIKEQRVKSGREGSARGRRESREGSAGSAAGVSTPVLTSPKKASNMEMDVKAVSQSESK
RLSPLLDSGRDSGHSSNSTKGERLSAKMRSLPGSNEPYEASSPKEIDASYVDPLGPQMER
PKTGAKKRVEDDDFADEELGDDLLPE
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgtgcatctggctggggaggaggaggatctttattcgggttacaacgactat
aatccaacgtttgactcagaggagttggaaaacgatctaggcttccagcaagcagtgagg
acaagttatgggagaagacctccgatgactgccaaatttcctggcactgccattggagct
cgacctttagcttcttcctttggagctcggatccctctggcctcttcattgggcagaccc
atgactggagctgtgcaggatggagcagcccgaccaatgactgctgtgagagcagcaggt
tacacttcctccctgacacgtggctcgacctttgaccctctgggccagtccaaaggccct
gcaccttcacttgaagcaaagaatgaggacacacctgaggagaagattaagattctggag
aaaaaagtgaatgacctaatagaagagagctgcatggcacagagcattggagccttacaa
ctggcccttgaaaaggccaaagaggcagggaggaaggagagagcactggtgagacaaaga
gaacaatctggcaatgcggatcacatcaatttagacctcacctactctgttttgctcaac
cttgccaaccagtatgcgaacaatgaaatgtatccagaagccctaaacagctaccaggtc
attgttaagaacaagatgttcaataacgcaggccgtctaaaagtcaacatggccaatatc
tatgtcaaacaaaagaactaccccaaagccatcaagttctaccgaatggcactggatcag
atctccaacgctcacaaggaaatgaggatcaagatcatgcagaacattggtgtggtcttt
gtccgcatgggccaatactcagacgccataacatcttttgagcacatcatgagtgagagt
cccaacatcaagaccggcttcaaccttatcctgtgctactatgccatcggtgatagggag
aggatgaaaaaggcctttcagaagctcatctctgttcctctgggcattgatgatgaagac
aagtacattccagctaatgatgacaccgactcaagtatggtcattgatgccattaagaac
gacaaacttcaccagatggaaagagatctaaaactcctggctgagaagtacatcatgaca
gcagccaaactcatcgctccggccattgagtcatcttttgccactggatttgactggtgt
gtggacatggtgaagaattctcagtatgttgagcttgccaacgatctagagataaacaaa
gctatcacctacctccgacagaaggacttcaaccaggttgaggcagtggagactctaaaa
acatttgaaaagaaggacagcagagtgaagagtgctgcagccaccaacctctctttcctc
tacttcctggagaaagattatgaccaggctgaccgatacgcagaccttgccatgaccgct
gaccgctacaacccggcagcacttatcaacaaaggcaacacagtgttcgtcaagcaagac
tatgaaaaggctgcagagttctacaaagaagcactgagaaatgattcctcctgcactgag
gccctctacaacctggggctaacatataagaaactgaatcgtctcgaggaggctctggac
tgcttcctgaagctccatgccattctacggaacagtgctcaagtcatgtaccagctggcc
aatctatatgagcttctggaagatcctcaacaggcaatcgagtggttgatacaggtcttg
agtgtaactcacaccgacccccaggcactggccaaactgggggagctctatgatggcgag
ggggacaaatcccaggctttccagtactactacgagtccttcaggtacttcccctccaac
atcgatgtgattgagtggcttggggcttactacattgagacacagttctgtgagaaagcc
attcagtactttgaaagagccacactgatacaaccaacccaggtgaagtggcagttaatg
gtggcaagctgctacagaagaagtggaaactaccaaaaggctctggaaacgtataaagag
attcaccgcaagtttccagaaaatgtggaatgtctgcgtttcttggtcaggctgtgtacg
gacatgggtttaaaggaagtccaagaatacgccaccaagctgaagaaagcggagaagatg
aaggagatcaaagaacagagagtgaagtcgggtcgggagggcagtgccagaggtcggaga
gaaagcagagagggcagtgccgggagtgctgcaggcgtctccacacctgtcctcacctct
cctaagaaggccagcaatatggagatggatgttaaagcagtatctcaatctgagtctaaa
cgactcagtccactgttggactcaggtagagatagcggccacagcagcaacagcactaag
ggagagcggctgagcgccaagatgaggtcacttcctggttccaatgagccctatgaggcc
agcagcccaaaagaaatagatgcgtcctacgtggacccactggggccccagatggagaga
ccaaagaccggagccaagaagcgcgtggaggatgacgactttgcagatgaagagctggga
gacgacctgctgccggagtag
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