Etheostoma cragini (Arkansas darter): 117953313
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Entry
117953313 CDS
T07493
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117953313
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117953313
NCBI-ProteinID:
XP_034742103
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Position
2:7869361..7900619
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AA seq
1475 aa
AA seq
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MDNLTTASTVSSGGGVGGSSRVVTESVTTTSDRYLSAGGPGERAGSGGTHSSVLFTSSSS
HAAGSGGPGASKGPRGFGITTRGGSSAVSSGGGSSAASGGSDVGFGSAGGQSSSLSSGFG
SGGREGKTEGLGAMTVSTVTKTSYSSGGSREAKKGSSSAYSPGPKERKGLTPMAAALSDA
FDDSSSTNSSPEYNRKEYGASSANRGRSQSRESQIRARLQSASPPASWTELDDVKRLLRG
NHSISTSPPQSPNNTLPIPRKAIMETRSMSESASTDHYGSVWSGGVNSSYSYNTNPNNLS
PSSTLYPSGVQNNLAVSSPSANSGLAASSTVPVYGVQNNLASTSPMILSPTGSNTQIVYG
VQKNVTGPGLSTTPVRPSSPIYDETPGKDFKFVLIEKENAPVKKEPERHVMTKDTGKQFM
SAAPASASNSGDSLTREKQKLSFSTMDEGRDAKSASLKVSTKDKATYAEIGKEDSGFSFC
SCCSWWKWLLGLLLGLLLLLGLLFGLIALGEEVKRLKSRVDDLEAITGTGSAKSSRLSAS
SGINIIDPLESSYIGRSASGSTLTNSDNGINLGAAGPGQDSAALQRAVQQLVRAELRSDA
VRDTLAYSLKGERGDPGPKGDPGLLGQKGDGGFPGLPGPMGHPGLDGPRGPKGSAGEPGS
EGAPGQRGRDGPMGPRGEAGPPGFAQKGDKGPQGEAGRPGPAGAAGPMGPKGAMGEQGAS
GSPGAPGPKGFQGEAGAHGEKGDRGTPGLAGTKGDLGERGPRGPTGEPGQPGSHGPAGPK
GSKGAAGDTGSMGLPGVRGPPGLPGDVGPSGEPGLPGKIIAPVGSNTVAIPGPPGPAGPP
GPAGIHGLSGPVGPAGVPGQPGPKGDQGEKGEKGEQGKPGEPGSSNTISAPQTGLPGPPG
PPGFPGAPGPQGPPGETKQGPPGRKGPAGEPGIGLPGPPGQKGEPGSFVPTSETFFAGPP
GPPGPPGPHGPQGSAGEPGQPGLPGSPGPGGHGYPGQPGPLGPQGPPGPEGPQGPKGDTG
APGIPGGSYSAGAPGPPGPPGPPGRDGSGSGSDVGQYMAEYFQSDSIRQYLAGPPGPPGP
PGPAGDGLVDDVANRVIAYIQSPGRGYDGTPGPPGPPGPPGSVSVNDLINILQQEDVRRY
IAGPPGPPGEPGHSNYILNTQDVAERVLNLMNERGAVGVPGPPGPPGPPGNLLATGYQAI
VGPQGPPGSPGVPGQQGAPGPAGPPGPPGFVNLYGAPPDQINPLVSYAEHAKRETLKAEP
QQYLKSDTVREAVFGLPGTPDPPGPPGHKGEPRVPGDRHSNSDPGEFSRLAVKVTDYIKF
HGLLRDVRDSDRLVQGPPGPPGIPGMPGHSQWVSSRENVVDVVEYIKSHGLLRDFERNHN
KHSIQGPPGPPGPPGPPGYSRLFGSHANVTDLVEYIKIHGAIVGPPGRPGQKGEMGFPGP
KGERGEQGLPGLEGPQGHKGEATLLTKRRRRGSGV
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctaactacagcctcgactgtcagctctggtggaggtgttggaggaagtagc
agagtggtcacggaatcagtaacaactacaagtgaccgttatctgagcgcaggagggcca
ggtgagcgagctggatcaggcggcacacacagctcagttctgttcacatccagcagctcc
catgccgccggctccggtggaccaggagccagcaagggacccagaggcttcggcatcaca
actcgagggggctcctccgctgtctcctctggtggagggagttcagcagcttcaggggga
tcagacgtggggtttgggtctgctggagggcagtcctccagcctgtcctctggttttggg
agtggtggcagagaaggaaaaacggaaggactaggcgccatgacagtttcaaccgtgaca
aagaccagctatagttcaggaggatccagggaagcaaagaaaggctcgtcctcagcttat
tcccccggtccaaaagagaggaagggcctgacccccatggcagcagctctctcagatgcc
tttgacgacagttcaagcacaaactcctctcccgagtacaacaggaaggagtacggtgcg
tcttctgccaacagagggagaagtcagagcagagagagtcagatcagagccaggcttcag
agtgcttctcctccagcaagttggacggagctggatgacgtgaagcgcctgctgagagga
aaccactccatcagcaccagccccccccagtcccccaacaacacgctgcccatccccagg
aaggccatcatggaaaccaggagcatgtctgagagcgccagcacagaccattatggcagc
gtttggtccggaggtgtgaacagtagctacagttacaacaccaaccccaacaacctgtcg
ccttcttccaccctgtacccatcaggagttcagaacaacctggcagtcagctctccctct
gcaaacagtggactagctgccagcagcactgtccctgtgtatggtgttcagaataacctg
gccagtaccagccccatgatcctctctcccactggatccaacacgcaaatagtgtatggt
gtgcagaaaaatgtgactgggcctggactcagcacaaccccagtgagacccagcagcccc
atttatgacgagacgcctggcaaagactttaagttcgtgctgatagagaaggagaatgct
cctgtcaagaaggagccagagcggcatgtcatgaccaaagacacagggaagcagttcatg
tctgctgcacctgcttcggcttccaactctggggactccctaacgagagagaaacagaag
ctctcattcagcacaatggacgagggaagagatgctaaatcagcaagcctaaaggtttcc
acaaaagacaaagccacctacgcagagatcggtaaagaagactctggctttagcttctgc
tcctgctgcagctggtggaagtggctgctgggcctcctgctaggcctgctcctcctccta
ggcctcctctttggactcatcgctttgggtgaagaagtgaaacgcctcaagagccgtgtt
gatgatttggaagccatcacgggcactgggtcagcaaagtccagccgcttgtcggcctcc
tctggcatcaacatcattgacccgctggagtcgtcatacatcggcaggagtgcctctggg
tcgactctgaccaactctgacaacggcattaacctgggggctgctgggccgggacaggac
agcgccgccctgcagagagccgttcagcagctggtcagggctgaactccgctcggatgct
gttagagatacactagcatactcactaaaaggggagagaggagatccaggacctaaaggc
gatccagggctgctgggacaaaaaggtgatggtggctttcctggcctaccaggccctatg
ggtcacccaggattggatggaccaaggggacccaagggaagtgcaggtgagccaggttct
gagggagccccaggccagaggggccgggacggaccgatgggcccccgtggagaggctgga
ccgccaggttttgcacagaaaggagacaaaggacctcaaggcgaggcaggacgtcccggt
cctgctggtgctgctggaccgatggggccgaaaggtgccatgggagagcaaggcgcctca
ggaagcccgggtgctccaggtccaaagggtttccagggtgaagcaggagcacatggagaa
aaaggcgatcgaggaacgccagggctggcaggaaccaagggggatctgggagagagggga
ccacgtggaccaacaggtgaaccaggacaacctggatcacatggccctgctggaccaaag
ggttctaaaggagctgcaggtgacacaggttcgatgggacttcctggcgtgagaggacca
cctggacttcctggagatgttggtccctcaggtgaaccaggactgccgggtaaaatcatt
gctccagttggctccaatactgtggctatccctggaccaccaggccctgctgggcctcca
ggtcctgctggaatacatggtctgtctggtcccgttggccccgctggtgtcccaggacaa
cctggacctaagggagaccaaggagagaaaggagaaaagggagagcaaggaaaacctggc
gagcctggtagttcaaacactatcagtgccccccaaactgggctgcctggaccgcctggc
ccaccaggatttcctggagcacctggtcctcaaggtcctcctggtgagactaaacagggt
cctccaggacgcaaaggtcctgcaggagagccaggaattggtttaccgggacctccagga
cagaaaggagagcctggcagctttgtgcctacctcagaaaccttttttgctggaccacca
ggaccaccaggaccaccaggaccccatggcccgcagggttcagcaggtgaaccaggtcag
ccaggtcttccagggagtccagggccagggggtcatggttacccaggtcagcctggacct
ctgggccctcagggtcctccgggcccagaggggccacaaggacctaaaggcgatacaggg
gccccaggaatccctggtggctcatacagtgctggtgctccaggcccacctggaccacct
ggaccacctggacgagatggaagtgggtctggatccgatgtgggccagtacatggcagag
tactttcagagtgacagcatcaggcagtacctggctggaccacctggacccccagggccc
ccggggcccgcaggggatgggctggtggatgatgtggccaatcgagtgatcgcctacatc
cagagtccagggagaggatatgatgggactcctggtccccctggccctccaggtccacct
ggctccgtctctgtcaacgacctcatcaacatattacaacaggaggatgtgaggagatac
attgctggtcccccgggacctcctggagaaccaggccacagcaactacatattgaacacc
caggacgtggctgaacgtgtcctcaacctcatgaatgagaggggggcggtaggtgtccct
ggaccccctggaccacctgggcctcctggaaacctgttggcaactgggtaccaagcaatt
gtgggtcctcaggggcctcctggttccccaggtgtccctggtcaacaaggtgcacctggg
ccagcgggtccacctggcccgcctggatttgtgaacctttacggggccccccctgatcaa
atcaacccactggtttcctatgcagagcacgccaaaagagagacgctcaaagctgaacca
caacaatacctcaagagtgacactgtaagagaagctgtgttcggacttcctggtacgcca
gaccctcctggacccccaggacacaagggagagccacgtgtacccggtgacagacacagc
aattcggatcccggagaattctccagattggctgtaaaagtaactgattacatcaaattc
cacggcttgctccgtgatgttagagactctgaccgtctcgttcaaggacctccaggacct
cctggaattccaggaatgcctggacacagccaatgggttagttcccgtgaaaatgtcgtg
gatgtggtggaatacatcaaatctcatggtctgctacgtgattttgaacggaaccacaat
aaacactccatccaaggaccaccaggaccacctggccctccaggtccccccggatacagc
agattgtttggttcccatgcaaatgtcactgatttagtggaatacatcaaaatacatgga
gctattgtaggaccgcctgggagaccaggacagaaaggggaaatgggattcccagggcca
aaaggagagagaggtgaacaagggcttcctgggctagaaggaccccaaggacacaaagga
gaagccactctgctgactaaaaggaggaggaggggcagcggtgtataa
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