Etheostoma cragini (Arkansas darter): 117953339
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Entry
117953339 CDS
T07493
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04382
Cornified envelope formation
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117953339 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117953339 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117953339 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117953339 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117953339 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117953339 (col4a2)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117953339 (col4a2)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117953339 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117953339
NCBI-ProteinID:
XP_034742140
LinkDB
All DBs
Position
11:complement(12063099..12129475)
Genome browser
AA seq
1674 aa
AA seq
DB search
MSGTMQGQHNRRLRNLRLLLLCLSIAILASIVHAGGKKDSGPCGGRDCSGGCQCFPEKGA
RGHPGPLGPQGAQGPPGKLGDPGIQGPKGQKGDRGRSGIIGPKGNVGMTGVPGFSGNNGI
PGHPGQAGPRGRPGADGCNGTHGESGFMGPPGYTGAPGFPGQPGWKGQKGDSLELTVYME
RFRGDPGFPGINGRLGPQGNPGQQGNIGFTGPKGPPGPPGPRGPKGTMTKVLKGLRGEKG
DSGLPGPPGNSTLQQIQPKYGPPGPRGEKGLKGNMGDSSDIKGETGVMGFPGSRGPSGAD
GRPGPRGDLGEQGPTGRDGPKGVRGDPGPLISSGNWISGAGPTGPPGEQGPVGERGPVGN
QGFPGPPGLPASETQQQVWDFMGPFGMKGEPGDKGQPGDPGRPADRAGPPGSSGRPGVRG
PPGPKGTWAEFFKGAPGGRGRPGNAGYKGLKGDHGLCECTIVNSPPGLPGPAGETGDAGM
TGEFGQEGDLGEPGPQGENGFPGPPGLRGEPGQKGRKGESREASQKGYPGDSGDPGRDGE
TGAVGAPGRNGLPGSPGIQGLQGEGPKGEPGDKGFPGRPGRPGAPGLSGEEGKVLGGVKG
QRGLPGDDGHAGYDGVPGTPGSPGGCSPTGDGGQMDVTGPCDAFPGPPGLPGPPGPSGLP
GPLGEPGQKGPHGPHGAHGEKGETGDQGIGGRPGPPGFTGPRGDLGFPGRKGSVGAPGLP
GAHGRYGAQGEKGAHGEIFGASPGPPGDTGLPGLQGNKGVTGDPGEQGYPGMDGMPGMIG
SRGERGPMGLQGEEGRSGPAGKYGYPGDPGRAGPPGPRGDIGQPGLPGERGTEGDLGPPG
PVGLKGNPGTHGNDGAFGEHGPSGEMGKLGADGHPGLPGMKGFKGSSGMSGFEGTRGKIG
VKGFSGFNGEPGLPGQVGLKGVKGQSGEKGDRGLRGAPGAKPHIPAQMIVDMKGAKGDKG
HFGNQGFTGPRGVKGLPGVPGDDGTHGLPGNPGNKKGYHGDPGPEGLPGMKGMPGLTGNR
GITGFDGMPGKRGIKGSPGAYGATGDKGRKGVKGETGARIDLPGTTGLKGEHGLSGEPGQ
KGLIGQPGDRGTPGFGGIDGRKGESGDPGISGYPGSDGQKGTPGNQGQKGFPGIPGQDGH
PGFPGFPGNKGFPGLKGLYGLHGLKGQKGVPGTPGLDTTGPAGESGIKGEKGEVGEPNSQ
PGAPGTAGLKGFQGPLGDHGQPGPPGLRGPVGQNGTLDRPGHRGDPGYKGPKGYQGSPGA
KGFPGVDAPPGEKGVPGVHGFPGLPGRKGYKGDQGSFGYRGPNGVSGKKGVKGEQGVMGV
PGVSGVKGERGPSGPKGNTGPTGVQGIPGDQGPLPIPIRIPGERGPPGPYGIQGPKGVRG
ETGPQGPPGDTGFMGPIGQKGMPGIGGRSGTPGFRGELGKMGHPGLQGMEGHRGNPGTRG
LPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSC
LPRFNSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPS
VAIAIHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIE
CNGAKGTCHYFANKQSFWLTSVDQPFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaagggcaacacaaccgaagactgaggaacctgaggctgctgctt
ctgtgcctctccattgccatcctcgcctcaatagtgcacgcgggtgggaagaaggacagt
ggcccatgtggaggaagagactgcagcggaggctgtcaatgtttcccagagaagggtgcc
aggggtcaccctggtcctctaggtcctcagggcgcccaggggcctccagggaaactaggt
gatccaggcatccaaggaccaaaagggcagaagggtgaccgtggccgtagtggcatcatt
ggtcctaaaggaaatgtgggaatgaccggcgttcctgggttttctggaaacaatggcatt
cctggccatccaggacaagctgggccacggggaaggccaggtgcagacggctgtaacggg
acacacggagaatcagggtttatggggccacccggctatactggcgcacctggttttcct
ggacagccaggctggaagggacagaagggagactctctggagctcactgtgtacatggag
cgcttcaggggagatccaggctttccagggatcaacggaagacttgggcctcaaggaaac
ccaggacagcagggtaacataggcttcacaggtccaaagggtcccccagggcctccaggt
ccccgtggaccaaagggtaccatgacaaaagtgcttaagggactccgaggagaaaaaggg
gacagcggactgccagggccgccaggaaactctactcttcaacaaattcagcccaaatat
ggccccccgggacctcgtggtgagaaaggtctgaaaggaaacatgggggattcgtctgac
atcaaaggtgaaaccggtgtgatgggattccctggatcacggggtccatctggtgcagat
gggcgtcctggaccaaggggggatttaggtgaacaaggaccaacaggcagagatggtcct
aagggagtcagaggtgacccaggaccattgatttcatcaggaaactggatttcaggagct
ggacctaccggtcctcctggtgagcagggtccagtgggagagagaggcccagttggaaac
caaggcttccctggacccccaggactccctgcctctgaaacacagcaacaagtttgggat
ttcatggggccatttggtatgaagggggagccaggagataagggccaaccaggggatcca
gggcgtcctgctgaccgggcaggacccccaggctctagcgggcgcccgggggtcaggggg
cctccaggaccaaaaggaacatgggctgagttcttcaagggggctcctggtgggagagga
aggcctggcaatgcaggctataaaggactgaaaggtgatcatgggttgtgtgaatgcacc
attgtaaactctccaccggggctacctggccctgccggggaaaccggtgatgctgggatg
accggagagtttggtcaggaaggtgatttaggagaaccaggcccccaaggagaaaatgga
tttcctggacctcccgggctccgcggtgagccggggcaaaaaggtcggaaaggcgaatcg
cgtgaagcatcacagaaaggatatcctggagactcaggggatcctggacgagatggtgag
acgggagcggttggtgctccgggccgaaatggtttgcctggtagtccagggatccaaggt
cttcaaggagaaggtcccaaaggagaacctggagacaaaggtttcccaggtcggcctggt
cgacccggtgcacccggactaagtggagaagaaggtaaagtccttgggggagtcaagggc
caacgtggtttacctggtgacgatggccacgcaggctatgacggagttccaggaacacct
ggcagcccaggcggctgtagtccaacaggagatggaggacagatggatgtaacaggtcca
tgtgatgcttttccaggacctccggggctgcctggacctccaggacccagtggattacca
ggtcccctaggtgagccgggtcaaaaaggaccacatggcccacatggagcacatggagag
aaaggagaaacaggagatcaaggcataggtggccgtcctggaccaccaggttttaccgga
ccccgtggagacttggggtttcctggcagaaaaggttcagtaggagcgcctggacttcct
ggtgcgcacggtcgttatggggcacaaggtgagaagggtgctcacggagagatctttgga
gcatcaccagggcctcccggagatacagggctgcctgggcttcaagggaataaaggcgtg
accggtgatccaggagagcaaggctatccaggaatggacggcatgcctggtatgattggc
tccaggggggagaggggccctatgggcctgcagggggaggaagggaggtctgggccagcg
ggcaagtacggctaccctggtgatcccgggcgagcaggtccacctgggccacgtggtgat
atcggacagccaggtttacccggagagaggggaactgaaggagacctgggacctccaggt
ccagttggattaaaaggcaacccaggaacccacggtaatgatggtgcctttggagagcat
ggcccatcaggtgaaatgggaaagcttggtgcagatggacacccaggacttccaggaatg
aagggattcaaagggtcttcaggcatgtcagggtttgagggtaccaggggcaaaatagga
gtgaagggcttcagcgggtttaatggggaacctggactgccaggccaagttggcttaaaa
ggagtgaagggtcaaagtggagagaaaggtgatcgtggtttgagaggggcacccggggcc
aagcctcacatccctgcccagatgattgttgacatgaagggagccaagggagacaagggg
cattttggaaatcaaggtttcactgggccgagaggtgttaagggtttgcccggtgtgcca
ggcgatgatggaacccatggtcttcctggtaaccccggcaataagaaaggctaccatgga
gatccaggaccagaggggctgccggggatgaaaggaatgcctggccttactggaaatcga
ggaattacgggtttcgatggaatgccaggcaaaaggggaattaaaggaagtcctggtgcc
tacggcgcaacaggagacaaaggaaggaagggagtcaaaggtgagacaggtgcgcgcata
gacctcccaggaaccacaggattgaaaggagagcatggtctttctggagagccaggccag
aaaggattgattgggcaaccaggggacaggggaacacctggttttggtggaattgatgga
agaaagggagagtcaggcgatccaggaatatcagggtacccagggtctgatgggcagaag
ggaactcctggtaaccaaggtcagaaaggctttcctggaatacctggacaagatggacat
ccgggttttcctggcttccctggaaacaaagggttccccgggctgaagggtctttatggc
ttgcatggactgaaaggacaaaagggtgtccctggaacaccaggtctggataccactgga
ccagctggggaatcaggaatcaaaggagagaagggagaggttggtgagcccaacagccaa
ccaggtgctccaggcacagcgggtttaaaaggcttccagggacctctaggtgaccatggt
caacctggaccaccaggattacgcggccccgtaggacaaaacgggaccctagacagacca
ggacacaggggggaccctggttataaaggacctaaagggtatcaaggttcccctggagcc
aaaggatttcctggtgtggatgctccccctggagaaaaaggtgtaccaggagtacatggg
tttcctggactccctggaaggaaagggtataaaggagatcaaggttcatttggatacagg
gggccaaatggtgtctctgggaagaaaggagtgaaaggagagcaaggagtgatgggagtt
cctggtgtttctggtgtgaagggagaaagagggccatctggtccaaaaggaaacactgga
ccaacaggtgttcagggaatccctggagaccagggtcctcttccaattcccatcagaatt
ccaggagagagaggccctccaggtccatatggtatccaaggaccaaagggggtcagaggg
gaaacagggccacagggcccccctggggatacagggttcatggggccaattgggcagaag
ggcatgcctgggattggtggtagatcaggaacgcctggatttcgtggagagcttggaaaa
atgggccaccccggtctgcaaggcatggaaggtcaccgtggaaaccctggtacccgcggt
ttacctgggatgccgggccgcagtgtcagcgtgggttacttgctggtgaaacacagtcaa
tcagagcagacgcccatgtgtcctgtgggcatgtcgaaactgtgggacggttacagtctg
ctgtacttcgagggccaggagaaggcccacaaccaggatcttggtttggctggctcgtgc
ctcccacggttcaacagcatgcccttcctgtactgcaatcctggagacatttgttactat
gccagcagaaatgataagtcctactggctgtcgacgactgctcctcttcccatgatgcct
gtagaagagggagagatcaaaccgtatatcagccgctgctcagtatgcgaagctccatca
gttgccatcgccattcacagccaggacatcaccatcccacagtgtcctgtgggctggcgc
agcctgtggattggctactccttcctcatgcacacagcagcaggaaatgaaggcgggggt
cagtccttgtcgtcacctggctcctgcctggaggacttccgcacaacaccatttattgag
tgtaacggggccaaaggcacatgccactactttgctaacaagcaaagcttctggctaacc
tccgtagatcagccgttccacactgagccggcatcagagacgctcaaagcaggccagctc
ctgtcacgcatcagccgctgccaagtctgcatgaagaacttgtga
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