Etheostoma cragini (Arkansas darter): 117953340
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Entry
117953340 CDS
T07493
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117953340 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117953340 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117953340 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117953340 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117953340 (col4a1)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117953340 (col4a1)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117953340 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117953340
NCBI-ProteinID:
XP_034742142
LinkDB
All DBs
Position
11:12129496..12171643
Genome browser
AA seq
1641 aa
AA seq
DB search
MLLPSGTLLLLAALYSSVDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGSMGPTGDLGEPGASGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGSPGIPGCN
GTKGDRGRDGAPGFDGLQGPPGIPGLPGMKGDPGGVIGIVPLKGDQGFPGTPGLPGFSGN
PGPVGPPGPRGYQGPKGDPGPPGLPGEKGDKLAFVSEKGDKGDQGIRGPPGPPGPPGPFA
EGSPTTVYLPGTPGDRGLQGDKGDKGQCIPHLAGVKGEPGPPGARGKPGKDGEDGLKGEK
GFPGSFGYTGSQGEKGERGPPGHGSGSPGAPGPRGLPGLNGEKGFPGPQGEAGPPGRHIE
GPRGETGQKGNVGEKGDSGLEGESLVGPPGQPGNTGPPGPPGPPINPNECDIEKGAPGPP
GPLGLQGELGQKGDRGDTCVQCEGFGPPGLPGPQGPKGDRGPPGLVGGKGEKGGFGAPGQ
PGRPGSAGIPGLIGAPGAVGEPGDILAGTGLKGEKGLAGVPGSPGPSGRDGQPGRDGQPG
IPGFKGEPAKEGIKGERGPDGDPGIIGSPGERGPPGLPGYGRPGEPGEKGSQGRPGIPGH
PGPSGAKGEPGKSVSTPGPQGVPGPRGVNGEPGAQGNRGLQGDPGLPGFPGPKGDQGPSG
IGFPGPTGPKGISGIPGAPGVPGEPGRPGQDGLTGKSGTPGQKGEPGRGLPGPKGSQGLP
GITGFQGEKGGVGLPGIPGQEGQTGPPGPQGVKGDLGPPGPPGLVGLPGAPGKGSPGAPG
PQGQAGEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGTPGFPGSPGPKGLPGPHGLPGR
DGPIGNQGSKGEMGVMGTPGVPGFPGPPGTPGSPGLRGDPGITGPRGNDGETGAKGERGD
RGLQGPPGNMSEVDMEHMKGEKGDIGKPGEPGFAGEKGHRGLPGNPGLSGKDGEPGLPGQ
PGEKGDPGFPGEPGGIGQPGQKGAVGEMGIPGPSGPKGSKGDIGTPGHHGFRGTDGQKGD
KGTAGVPGIGLPGTPGEKGQTGQPGFPGPPGERGLKGLEGMPGQPGLQGIKGDKGTIGYS
GQPGRPGEKGVPGLQGSEGEKGRDGRPGEGGLQGPPGVPGEKGEPGVDGIPGSSGERGDT
GAPGRGFPGPPGVLGGKGDKGSPGFPGPPGHPGVSGIKGDKGLPGSQGAQGETGERGLPG
ISLEGPKGERGETGQPGEAGSSGVPGTSGVPGRNGQKGDKGDQGLPGFQGESGHKGDPGV
TGLPGQSGLPGIDGQKGERGLQGVPGFPGTRGNFGDIGFKGEVGDRGFPGEKGNVGPPGP
PGPSIFVKGDIGFQGPQGLPGPQGPSGLPGQKGLQGVTGIPGPKGEDGIPGYHGQPGSKG
DPGLPGPQGPRGHPGPPGPDGVPGQVGLPGPSSMEHGFLVTRHSQTVEVPHCPEGTSLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMSMAPITGEGIKPFISRCSVCEAPAMVIAIHSQTIMIPPCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPT
TLKAGSLRTHISRCQVCMKRT
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgttactgctggcggctctttactcaagtgtagacctg
acaggggctgagggctgtggaacatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttcctggtcttcaaggtaatatgggatttccagggatgcag
ggacctgaagggcctccaggatcaatgggccccacgggagatctgggtgaacctggagct
tctggactaaaaggagtgcggggtcctcctggtctgcctggtttcccaggaaacccggga
ctaccaggcatcaatggaaatgacgggccaccaggatcgccaggtatcccaggatgcaat
gggactaaaggagacagaggaagggatggcgctcctggttttgacggtcttcaaggacct
cctggcatcccaggacttcctggaatgaagggtgaccctggtggtgtgatcggaattgtt
cccctaaaaggagatcaaggattccctggaacacctggattacctggatttagcggaaat
cctggacctgttggacctcctgggcctcgaggctatcaaggaccaaaaggtgatcctggg
ccccctggcctccctggagagaagggtgacaagctggcctttgtgagtgaaaaaggagac
aaaggtgaccaaggaattcgtggtccacctggccctcctggacctcctggtccatttgcg
gaaggctcacctaccacagtttacttacctggaacaccgggcgacagaggacttcaggga
gacaaaggagacaaaggccagtgcatcccgcatctagctggtgtcaaaggtgaacctggc
ccgcctggagcaagaggtaaacctggaaaggatggagaggatgggctgaagggagaaaaa
ggcttccctggatcctttggatacaccggttcccagggtgaaaagggtgaaagaggacca
ccaggtcacggtagtggttcccctggtgctcccggtcctcgtggtctcccagggttaaat
ggagaaaaggggtttcctggtcctcagggagaggcaggtccaccaggacggcacattgaa
gggcctcgaggagagacgggtcagaagggaaatgttggggagaaaggagacagtggttta
gaaggagagtctcttgttggacctccgggacaaccaggaaacactggaccacctggacca
cctggaccaccgattaaccctaatgaatgtgacattgagaaaggagcgcctggcccacct
ggacctctagggttacaaggggaattgggacagaagggtgacagaggtgacacctgtgtt
caatgtgaaggcttcggtccacctggattacctggcccccaaggccctaaaggagatcga
ggacctcctgggctagtaggggggaagggagaaaagggtggatttggcgctcctggacaa
cctggtagacctggttctgcaggcatccctgggttgattggagcccctggtgctgtcggt
gagccaggggacattctcgcaggtactggtctgaagggggaaaaaggtctggctggtgtt
cctggttccccagggccatcagggagagatggacagccagggagagatggacagccaggt
atacctggcttcaaaggagaaccggccaaagagggcatcaagggtgagcgtggaccagat
ggggaccctggtataattgggtctccaggagaaaggggtccaccgggcctgccaggctac
gggcgaccaggggagcctggagagaagggcagccagggaagaccaggcattcctggccat
cctggaccatctggtgcaaaaggtgagccaggtaaaagtgtaagcactcctggacctcag
ggagtacctggaccacgtggagtaaacggcgaacctggagctcaaggcaacagaggcctg
cagggagacccagggttgccgggtttccctggaccaaagggtgatcaaggaccctctgga
attggatttccaggcccaactggtccgaaaggaatcagtggaattcctggagctccagga
gtaccaggagagccaggaagaccaggacaggatggcttgactggaaaatctggtacacct
ggacaaaaaggtgaaccagggcggggtcttccaggcccaaaaggttcgcagggcctccca
ggaattactggtttccagggtgaaaagggtggcgttggactacctggtattcctggacaa
gaaggccagacaggacccccaggacctcagggagtcaaaggtgacttaggaccgccagga
cctccgggactggttggcttaccaggtgctccaggaaaaggttcccccggagcccctgga
ccacaaggacaagctggagagcctggaccatacggtagggaaggtgtaaaaggagaaaag
ggctacccaggtcctcctggtctggacatgccggggcctcagggagagaagggaaccccc
gggttcccaggaagcccaggtcccaaaggactgccagggccgcacggcctaccaggccgg
gacggaccaattggaaaccaaggttctaaaggtgaaatgggggtcatggggacaccagga
gtaccaggattccctggaccacctgggacacctggatctcctggactaagaggtgatccc
ggcattactggaccaagaggcaatgatggagagactggagctaaaggagaaaggggagat
cgaggtcttcagggacctcctgggaacatgagcgaagttgacatggagcacatgaagggg
gagaagggagatattggaaaaccaggtgaacctgggtttgctggagagaagggccaccgt
ggacttcctggtaaccctggattgtcaggcaaagatggagagcccggattacctggacaa
ccaggtgagaaaggagaccctgggttccctggagagcctggtggtataggacaacctgga
cagaagggcgctgtaggagagatgggaataccaggtccgtctggtccaaagggttctaaa
ggagatattggtacaccaggacatcatggattcagaggcacagatggacagaaaggagac
aagggaacagccggagtcccaggtattgggctcccaggaactccaggagaaaagggtcag
acaggccagccaggattcccaggaccaccaggagagaggggtctgaagggtcttgagggt
atgcctggccagccaggactccaaggaatcaagggagacaaaggaaccattgggtattca
ggtcagccaggtagaccaggcgagaagggtgtgcctgggctgcaggggtctgaaggagaa
aaaggtcgagacggtcggcctggtgaagggggcttgcagggacctcctggtgttccaggt
gaaaagggagaacctggagtggatggcatccctggatcctcaggggagagaggagacaca
ggtgcacccggccgaggtttccccggaccacctggagtgcttggtggcaaaggtgacaaa
ggtagtcctggcttccctggccctcctggtcatccaggtgtttctggtatcaaaggcgac
aagggacttccgggctctcagggggcccagggggaaacaggagagaggggtctccctggt
atctctctggagggccctaagggagagaggggagaaacaggacaaccaggagaagcagga
tcctcaggagtaccaggaacctctggtgtgccaggcagaaacggacaaaaaggagacaaa
ggagaccagggtcttcctggtttccagggagagtcgggacacaagggtgaccctggagtt
actggacttcctggacaatctggccttccaggtattgatggacagaaaggagagagggga
ttgcagggtgtccctggcttcccaggtacaagaggtaattttggggacattggattcaaa
ggagaagttggagacagaggattcccaggagaaaagggcaatgtaggtccccctggtccc
cccggccccagcatcttcgtcaaaggagacatcggattccaagggcctcaaggcctcccg
ggaccccaggggccatctgggctccctggacagaaaggactgcaaggtgttacaggtatt
ccgggaccaaaaggcgaagatggcattcctggataccatggtcagcctgggtccaaagga
gatcctggccttccggggccacagggacctagaggacaccctggccccccaggacctgac
ggtgttccaggtcaagtgggtctccccggcccctcctccatggaacatgggtttctggta
acccgtcatagccaaacggtggaggttccacactgccctgagggaacgtcgctcatatat
gatggctactccttgctctacgtacaaggcaacgaacgttcccatggacaggacttaggt
acggcaggcagctgtctaagaaagttcagccccatgcccttcctcttctgtaacattaac
aacgtgtgcaactttgcctcccgtaatgactactcctactggctcacctcccctgagccc
atgcccatgagcatggcacccatcactggtgaaggcatcaaaccctttatcagcaggtgt
tctgtgtgtgaagccccagcgatggtgatagcaattcacagtcagaccatcatgatcccc
ccatgccctcacggctgggactctctgtggattggctactcctttgtcatgcacaccagt
gctggtgctgagggatcaggccaggctctggcctctcctggttcctgcctggaggaattc
cgcagtgctccattcatcgagtgtcatggtcgtggaacctgcaactactacgccaactcc
tacagcttttggctcgccaccattgaagacaatgagatgtttacgaaacctgtccccaca
acgctaaaagcaggcagtctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acataa
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integrated database retrieval system
