Etheostoma cragini (Arkansas darter): 117953460
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Entry
117953460 CDS
T07493
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117953460 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117953460 (prpf40a)
Spliceosome [BR:
ecra03041
]
Complex A
U1 snRNP components
U1 related factors
117953460 (prpf40a)
Complex B
117953460 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Lipocalin_5
Motif
Other DBs
NCBI-GeneID:
117953460
NCBI-ProteinID:
XP_034742422
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Position
11:16487273..16503337
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AA seq
879 aa
AA seq
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MSSSDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPSSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDLTAAAPGTASTT
NGSPQEEQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAMAPGITAAPAVQADNTATM
ATMIEAETATAVSEEHLSQAAMHHTAEVKTADAPVASSESSAVTEATASIEITKEERPEI
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSPSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDTEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggacgctaataatggcccgagccaagcgcccccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctcct
attggaatgccccctatggggcagcgaccgtccagcatgactccaatgcctcctggcata
attccccctggtataatgccaccaatgggggcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgacttgacagctgctgcacctggtactgccagcaccaca
aatggatctccacaggaagaacagccaaagaagaagtccctgtggacagaacacaaatca
ctggatgggaagacctatttttacaatacagagaccaagcaatccacatgggagaaacca
gatgatctcaaatctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattataactctcagacaaaggagtccagatggacaaag
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcaatggctcctggcatcacagcagctcctgcagtgcaagcagataatacagccactatg
gcaaccatgattgaggcggaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gccatgcatcacacagctgaggtcaagactgcagatgcacctgtggcttcctcagagagc
tcagccgtcacagaggccacagccagtattgaaattacaaaagaagaacgtccagaaatt
cagaagaaaacgtacaaatggaacacgaaagaggaggccaagcaggctttcaaagagctt
ctaaaggagaagggtgtgtcatcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatcctcgctacagcgcactacccaaactgagtgagaagaaacaggcgttcaatgct
tataaagtccaaacagagaaggaagaaaaagaagaagccagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagaacagatgtttaatgagcttgaggtgtggagctgtgtaccagagagggac
cggctagagatctatgaagatgtattgttctaccttgctaagaaagagaaggagcaagcc
aagcagctgagaaagaggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtcagaggcccagcagtacctgctggacaaccctaccttt
gcagaggatgaggagctgcagaatatggacaaagaggatgccctcatttgttttgaggag
catatccgggctctggagaaggaggaagaggaggagaaacaaaagactcttctcagggag
agaagacgacaacgcaagaacagagaggccttccagaaattcctggatgagctccacgat
cacggtcagctgcactccatgtctgcctggatggagatgtacccgaccctgagctccgac
atccgattcgccaacatgctgggccagccgggttccactcccctagatctgttcaaattc
tatgttgaagacttgaaggcccgctaccatgatgagaagaggatcattaaagatattctc
aaggacaaaggtttcctggtggaagtcaacactagctttgatgactttggatctgtgatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggctttcaacagt
ttactggagaaggcagaagcccgagagagagagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaaaaacatgctgaagcaggccacaccacccctggagcca
gagactacatgggaggggatcagggagagatttttaaaagaatctgcttttgaagacgtg
actctggagtccgagaggaaaaggatattcaaagacttcatgcatgtcttggagcatgag
tgccaacatcaccactccaagactaagaagcactcaaagaagtctaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaggatgaggaataccacaagaagaaa
aagaggtcaccgtccaaatctccttccgaacgctcatcaagtggagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcatcc
ccagactccgacactgagaagaaaggaagggagcgtgatggaaagcgtgaaaaggactta
gagaaagataaagagaacgacaagtctcgggggaaatctcgctcagactccaaacagaag
tctcctaaaagaaaagcggcaaaagaggagggcggctgggatacatcaggcagtgagctg
agtgagggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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