Etheostoma cragini (Arkansas darter): 117953719
Help
Entry
117953719 CDS
T07493
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117953719 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117953719 (copa)
Membrane trafficking [BR:
ecra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117953719 (copa)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117953719 (copa)
Exosomal proteins of bladder cancer cells
117953719 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
117953719
NCBI-ProteinID:
XP_034742868
LinkDB
All DBs
Position
12:complement(20513294..20530480)
Genome browser
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPAEDLVVSASLDQTVRVWDISGLRKKNLSPGSVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSSDTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWEESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKDTVPEVDPNAQLLQPSPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADLDMEAP
GGEGWGDDAELQLDEDGFMDAQEGLGEEGGMKEEGGGWEVEEDLDLPPELDIPAGAGGGG
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFTPYKALFMQT
MSRGRTCYLGLPSLPCLRGHPQRNWKDCGAKQGLPAVGMRLSDLIARLQQCYQLTTSGRF
EEAVERFRIILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKETLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTR
KILSACEKTLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPIYKGQICR
VTQATEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttaactaaatttgaaacaaagtcggcccgtgtcaaaggcctaagttttcatccgaag
agaccatgggttcttgcaagtttgcacaacggagtcatccagctgtgggactatcgcatg
tgcacgctgatcgacaagtttgacgagcatgatggccccgtcagaggcattgatttccac
aaacagcagcctctgtttgtgtctggaggagatgattacaaaatcaaggtgtggaactac
aagctgagacgctgcctcttcactctccttggacaccttgactacatcagaaccaccttc
ttccaccatgagtacccctggattctgagtgcctcagatgaccagactattcgcatctgg
aactggcagtccaggacctgcgtctgtgtgctcaccggccataatcactatgtgatgtgt
gcccagttccacccagctgaggatctcgtggtatcagccagtctggaccagaccgtgcga
gtgtgggatatttccggtctgaggaagaagaacctgtctccaggctctgtggagacggat
gtgcgcggcatctctggtgtcgacttgtttggtgcctcggatgctgttgtcaagcatgtc
cttgagggtcacgaccggggggtcaactgggccgcctttcaccccaccatgcctctcatt
gtgtccggagctgacgacaggcaggtcaagatctggagaatgaacgaatccaaggcatgg
gagctggatacgtgccgcgggcactacaacaacgtgtcctgtgccgtcttccacccgcgc
caggagcttattctgtctaactctgaggacaagagcatccgcgtgtgggatatgtccaag
aggactggagtgcagaccttccgccgggaccacgatcgcttctgggtgctgggggctcat
ccaaacctcaacctgtttgctgctggtcatgacagcggcatgattgtgttcaagctggag
cgtgagcgtccagcatatgccgtgcacggcaacatgctgtactacgtcaaggaccgtttc
ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctgcgcagtggg
tctaagtttccggtgttcagcatgtcttacaaccctgcggagaacgcggtcctgctttgc
actagggctaccaacctggagaacagcacctatgacctgtactctattcccaaagaaagt
gactctcagaaccctgatgcaccggaggggaagaggtcctccggtctgactgccgtctgg
gtggccaggaacagatttgccgtcctggatcgtatgcactctctgctgatcaagaacctg
aagaatgaaatagtgaagaaagttcaggtgccgagctgcgaggagatcttctacgccggg
acaggttcattgttgctgcgtgatgccgatggcgtcacgctgttcgacgtgcagcagaaa
cgctctctggccaccgttaagatcgccaaggtgaagtacgtggtgtggagttctgacaca
agccacgtggctctactggccaaacacgccatcatgatctgcaaccgtaaactagagagt
ctgtgcaacattcatgagaacatccgagtgaagagtggagcctgggaagagagtggagtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctctggtgatcatggcatc
atcaggaccctggaccttcccatctatgtgacccgtgtgagaggaaacagtgtttactgc
ctggacagggagtgcaggccgcgcgtcctcaccattgaccccacagagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgatgaggtgctccacatggtgcgtaatgccaagctg
gtgggccagtccatcattgcctacttgcagaagaagggttaccccgaggtggcgctgcac
tttgtcaaagatgagaagacacgctttagtctggctctggagtgtggcaacatcgaggtg
gctctggaagcagccaaggccctggatgagcgtagctgctgggagcgtctgggtgaagca
gcactgttgcagggtcatcaccaggtcgtagaaatgtgctaccagaggaccaagaacttt
gacaagctgaccttcctctacctcatcactggcaacttggccaagctgcgcaagatgatg
aagattgctgagatcaggaaggacatgagtggccactaccaggcagctctctacctggga
gatgtcagtgagagggtccgcatcctgaagaactgtggacagaagtctctggcttacctg
actgctgccactcatgggctggatgaagaggctgaggcgctgaaggagacctttgaccca
gaaaaggacacggtcccagaggttgatcccaatgcacagctgctgcagccttctccaccc
attaaccctctggacaccaactggcctctgctcactgtatcaaagggcttctttgaggga
gccattgcagccaaagggaaggcaggtcagatggctgccgacctggacatggaagcccca
ggaggcgagggctggggagacgatgctgagcttcagctggatgaagatggcttcatggat
gcccaggaagggttaggggaagaagggggaatgaaagaggagggaggaggctgggaagtg
gaggaagacctggaccttcctccagaactggacataccggcgggtgcaggtggaggaggg
gaagatggcttcttcgtcccaccgaccaagggcatgagtcccacgcagatgtggtgcaac
aactcccagctgccagtggaccacatcctggctggctctttcgaaactgctatgagattg
ctacacgaccaggtaggagttgtgaacttcaccccctacaaggctctgttcatgcagaca
atgtccagaggccgcacctgttacctggggctgccctccctgccctgcctgcgtggccat
ccccagagaaactggaaggactgtggcgcaaagcaaggactacctgctgtgggcatgcgt
ctttccgacctaatcgcccgcctgcagcagtgctaccagctgactacgtccgggcggttt
gaggaagctgttgagcgcttcagaatcatcctgctgtctgtaccgctgctggtggttgat
aacaagcaggagattgcagaggctcagcagctgatcaccatttgcagggagtacatcgtg
ggtctgaccatggaaaccgagaggaagaagttgcctaaagaaacattggatcagcagaag
aggctttgtgagatggctgcttattttacccactgtaatctccagccagtccacatggtg
ctggtgttgcgcacagctctgaacctcttcttcaaactgcgcaacttcaagacagctgcc
agctttgctcgacgcctgctcgagctggggccgaagccagatgttgcacagcagacccgt
aagattctgtcagcctgcgagaagaccctcacagacgcccaccaattgaactacgacccc
cacaatccgttcgacctgtgcgctgcctcttttgtccctctgtaccgtggacgtcctgtt
gagaagtgccctctgtctggagcctgctactgccctatatacaaaggccagatctgcaga
gtcacacaggcgacagagattggtaaggatgtaatcggtctgcgtgtgagtccactacag
tttcgttaa
DBGET
integrated database retrieval system
