Etheostoma cragini (Arkansas darter): 117953726
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Entry
117953726 CDS
T07493
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117953726 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
117953726 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117953726 (thoc1)
03041 Spliceosome [BR:
ecra03041
]
117953726 (thoc1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117953726 (thoc1)
Spliceosome [BR:
ecra03041
]
Complex C
Other components
EJC/TREX
117953726 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117953726 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
117953726
NCBI-ProteinID:
XP_034742883
LinkDB
All DBs
Position
12:complement(13421572..13428850)
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AA seq
654 aa
AA seq
DB search
MSPPLFNFVDAKDKFTASARHALVGKTSKPLINTFNQFPGNEAEKKTTLDQALRCVLGDQ
IVEQKASCDEYLSLIYLSISAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENITVFNKNEQESTLGQKHTEEKEEGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEEMRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCVLNDDQTTWIEETTKLV
YQLLREIPPDGDQFATMVEHILNTEESWNSWKNEGCSSFVKERPVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEDDDDDNGDNLLKDSNDSPSIQNKMVTNQQMDDIAAKLGAQWKMLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFSQIADNLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcccttattcaattttgtcgacgctaaagacaaatttacggcgtctgccaga
catgccctagttggaaaaaccagcaaacctttgataaatactttcaaccagttccctggg
aatgaggcagaaaagaagaccacacttgaccaggcgctgaggtgtgttctcggtgatcag
attgttgagcagaaggcgagctgcgatgaatacttgtctctcatctacctgagtatttct
gcagttacagaaggtatttgttctgctacaactcctttccttctgcttggagatgtactg
gactgtcttcctcttgaccaatgtgacaaaatcttctcatttgtcgaggagaatgtctcc
acctggaaatcgaactctttttacacggctgggaagaactacttgttgaggatgtgtaat
gatcttttaagaagactgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgtctcttccctctgtctgaaaaatcaggtctcaatctgcagagccaattt
aatctggagaatataacggtgttcaacaaaaatgaacaagaaagcactctgggccagaag
cacacagaagaaaaggaagagggcatggaggtggaagaaggagagatgggagaggatgat
gctcccgcaccgtgttccattccgattgactacaacttgtacagaaagttctggacactg
caggactacttcaggaaccctgtgcagtgttacgataaattcagttggatgacattccta
aagttctcagatgagactctggcagtgttcaagagctataaactggatgacatgcaggcc
tctaagagaaagctggaggagatgagagcatctggaggagagcacgtctactttgccaag
tttctaacaagtgagaagctcatggacttacagctcagcgacagcaacttccggcggcac
attttactgcagtacctcatcctcttccagtacctgaagggtcaggtcaagttcaaaagc
tctaactgtgttctgaacgatgaccagactacatggattgaagagacaactaaactggtt
tatcagctgctgagagagatcccccctgatggagaccagtttgccaccatggttgagcac
attctcaacacagaggagagctggaacagctggaaaaatgagggatgctcgagctttgtg
aaagaaaggccagtagatgacaaacccaaaagacccaccaggaaaagacaagccccagaa
gatttccttggaaaagggccggaccgcaagatattcatgggaaatgatgagttgactcga
ctgtggaacctgaaccaggacaacatggaggcctgcaagtcagacagcagggagtttatg
ccatcgctggatgaattctttgcagaagccattgaacaggccgaccctgctaacatggtg
gaggaggagtacaaggttgtgcggaacccaaactacggctggcgtgctctaaggctgctg
tccaggagaagtccacacttctttcaaccaactaaccagaagttcaagagcctggcagac
tacctagacagcatggtcagcaaactggccaaagaattgccgaaggatattccctccgaa
gagatcaagacaggagaagacgatgacgacgataatggagacaatcttctcaaagacagc
aatgacagtccgagcatacagaacaagatggtgactaaccagcagatggatgacatagca
gccaaactgggcgcgcagtggaagatgctggcatctcatttggagatgaaggcagcagag
ttgcgagagattgaaaccgacagcgaagatgttgacatgcaggccaagctgctgcttgta
gcctggcaggatagagagggaacacaagccactgtggagagcctggtcacagctcttaat
gctgcaggattttcccagattgcagacaacctcaatgaggcttaa
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