Etheostoma cragini (Arkansas darter): 117953857
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Entry
117953857 CDS
T07493
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117953857 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
117953857 (acin1a)
03015 mRNA surveillance pathway
117953857 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117953857 (acin1a)
03041 Spliceosome [BR:
ecra03041
]
117953857 (acin1a)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117953857 (acin1a)
Spliceosome [BR:
ecra03041
]
Complex C
Other components
EJC/TREX
117953857 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117953857
NCBI-ProteinID:
XP_034743139
LinkDB
All DBs
Position
12:6655600..6671931
Genome browser
AA seq
1787 aa
AA seq
DB search
MADLEDVKLDGRSLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTSEPEDHTEVNNSTSCP
PQVQDATPALAEQHKPPGPSGGEGLFGAVNEEEGNRNQEADMSGPPASGSVVPGGERRPD
KGSASNKIAADSDDDDSEDGEEDGDDDDWESGARRRSHREPAKVPTTRERSGASCQPPQQ
HMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSSSTSSSGSSSSGSR
SSSPEPQRSGHAERKPGPLTLLARKMASEGAFSGAGWHRGAGEGDRQDSSTPATSFPGRG
HPEGLVSAITHTANTAGPVSFPMISGTHQGITGAQSAHIQVPVSLLKATAAEERDRERDS
QILREKALELQRLQMQRKLEQEHERVLEKERIERQQALEREEREKALQRERELALERERK
EMELALAKEREAQEQALAQERALELERQKELERQRALEHERLQREKEEREKREREEMVRA
MELERAKALEQERKERERALEQERLQREIALEAERKEKERIEREKALEQERLERERLERE
KALEKERLEREKALEQERLEREKALEQERLEVERALVQERLEKEKAIEQERIEREKALEQ
ERIEREKALEQERIDREKALEQERIEKEKALEQEQIEKEKALEQERIKREKALEQERIER
EKAFEQKRIEREKALEQERIEREKVLEREKERLERERALEQRLELERKEKERNERDKALE
QERIEREKALREREEKERLEREAALEQVRKEKERAEKEKKERLEREKALEKEKKEMERAL
EQERLKKEQAMQEEKEEQERALEQEKERARGTEKDRESHLPPSKHGREIGLTPLPTPPPL
STGPGRKSSTEAGEQEDAHTPMSRCEAAESGAPLPATLQLPQSSFKKFRFLRDSPIQLQS
SSPSMVIKRPRNFSDTAQPRASHVSSLPSSAEQEDPQMRTKQEVVARAPGSEGAQPEKET
TVNTSVVLSSKKEGATSLVLEEKDKADTVKSEQAAKESTKKTKEVDESKGPTNPVATAQQ
RGRATNKEEKLVRQRSSSNDSSSSESDSRSSSSRSSGSSTSFQEKTCSTSRIRRDGTPER
DSSPQHRVTQEAQAEGLKETPKASPGKREMSVEKSNATADGDSHTKKPFIEAPTREASQR
KKDNEREEKTDKQRQLKETAMAEPEKLPETSEETPKGFSARKISISSSKLSPGTGSAEGE
QDSGAAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIRPCLGQEAVVDLHPEEAVLS
GAEDEERECSDQDLQIRRTVTQVVHSESQENGEKETKRSRHDELEEDEPQGDTEMTRTHE
EKMDTSFPGAVESQSPSHSSHDVETNTVTPSDTLIRRSISQQKTGVSITIDDPVRTARQP
SPPRGKVSNIVHISNLVRPFTLGQLKELLGRTGTLVEEGFWIDKIKSHCYVTYCSSDEAV
ATRAALHGVKWPQSNPKVLNVDFCQQDELDFQKGLGVAGKPGAEERGPGSGRGRTSALPS
LLPERDQWAEREREMERREKARAEREWDRDKVREFGKPGEEKEEGPRRSRSRERRRKERG
KSKEKKTEKKEKMAEDPPAKLLDDLFRKTKAAPCIYWLPLTEEQFVQREAAKAERMKERE
KRRKEQDEEEEKKREEERKERVKAGGGPPGERSEGEKEKEKEKEKEKEKDRDGERDRDRD
RGRDRERERERVRENDKRRDAYRRPEGRAAGVGRRSRSRSDPRERRR
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctggaagacgttaagctggacgggagatcgctacagtcccttcgagtagcg
gatttaaaagctgctcttgaggagagaggactctcgaaaagtgggcagaagaatgcttta
ataaaaagactcaaaggggctctcatgctggagaatctgcagaggacttccactgctcac
attgggctgcagccaaactcacagattggtgaggaaatgagccagaacagcttcatcaag
cagtatctggctaaacagcaggagctgctgaggcagcgactggagagagaagctcgtgaa
gcatatgacacaagtgagccagaggaccacacagaagttaataacagtacatcatgccct
cctcaagtccaggatgccacaccagcattggctgagcagcacaagccacctggcccctct
ggtggagagggattgtttggcgcagtgaatgaggaagagggtaacaggaaccaggaggct
gacatgtctggtcctcctgcttctggctctgtggttcctggtggtgagcgccggccagac
aaggggtctgcctccaacaaaattgctgctgacagcgacgatgacgatagtgaggatggc
gaggaggatggtgacgatgatgactgggaaagcggtgctcgaagaagaagccacagagag
ccagcaaaagtgcccacaactagagagaggtctggtgcatcctgtcaacccccgcagcag
cacatgccttcccttttgtctcctcaactccgccagccgacacctcctccctccccacct
ccagagttatcattccccttgcctgacacccctaaacagagcccccctagtccagatgta
gccccagctaggcgctcatccagtacctctagctctggttcatccagcagcggcagccgc
agtagcagcccagagccacagaggagtggacatgctgagcgcaagccaggcccactgacc
cttctggcacgtaaaatggcatcagaaggtgctttttcgggagcaggttggcaccgcggc
gctggggaaggtgataggcaggacagcagtactccggctacatcatttcctggcagaggt
catccagagggtctggtatctgccatcactcacacagccaatactgcaggccctgtgtca
tttcccatgatttcaggcactcaccagggtatcacaggagcacagtcggctcatattcaa
gtacctgtgagtttgctcaaagccacagcagcagaagagagggacagagagagggactct
cagatattaagagaaaaggcccttgagctgcaaaggctacagatgcagagaaaacttgag
caagaacatgagagagttctggagaaagagagaattgaacgtcagcaggcattagaaaga
gaagaacgagaaaaggctttgcagcgggagagagaacttgctctagaacgagagaggaag
gagatggaactagctttggccaaagagagggaagcgcaagaacaagccttggcacaagag
agggccttggagctggagaggcagaaggagcttgaaagacagagggccctggagcatgaa
cgtctgcagagagaaaaggaggagagagagaagcgagagagagaagaaatggtacgagca
atggagctagaaagagctaaggctttggagcaggaaaggaaggagagagaaagagctctt
gagcaagagaggctacagagggaaatagctctggaggctgagagaaaggagaaggagagg
attgagagagaaaaggctttagagcaggaaaggttggaaagagaaaggttagagagagag
aaagccttagagaaagagagactagagagggagaaagccttggagcaagagcgactagag
agggagaaagccttggagcaagagagactagaagtggaaagagccctggtgcaagagcga
ctagagaaagaaaaagccatagagcaagagcgaattgagcgagagaaagcattggagcag
gagcgaattgagcgagagaaagccttggagcaagagcgaattgatcgagaaaaagcctta
gagcaagagcgaattgagaaagaaaaagccttagagcaagagcaaattgagaaagagaag
gccttagagcaagagagaattaaaagagagaaagccttagagcaagagagaattgaaaga
gagaaagcctttgagcaaaagagaattgaaagagagaaagccttagagcaagagagaatt
gagagagagaaagtcttggagcgagagaaagagaggttggagcgggagagagccttagaa
cagaggttagagcttgagaggaaggaaaaggagagaaatgagagggacaaagcattagag
caagaaaggatagagagggaaaaggccttacgagagagggaggaaaaagagagattggag
agagaggcagctctggaacaggtgaggaaggagaaggaaagagccgaaaaggagaagaaa
gagaggctggagagagagaaagctttagagaaggaaaagaaggagatggagagggcactc
gaacaagaaaggttaaagaaggagcaagcaatgcaggaagaaaaggaggagcaggagagg
gccctggaacaggagaaagagagagctagggggactgaaaaggatagggagagtcacctc
cctccttccaaacatggccgtgagattggtcttacccccctgcccactcctccccccctc
tccacaggaccaggtagaaagtcatcaacagaagcaggagagcaagaagatgcccatact
ccaatgtcccggtgtgaagcagcagaatccggtgcacccttgccagcaacacttcagttg
cctcagtcctcattcaagaaattccggtttttacgggactccccaattcagctccaatct
tcttccccttccatggtcataaaacggcctcgtaacttttctgataccgcccagcctcgg
gcctcacatgtttcctccctcccatcctccgctgaacaggaagatccacagatgcggaca
aaacaggaggttgttgccagggcgccaggatctgaaggggcccagcctgagaaggagacc
actgttaacacctcagtggtcctaagttccaaaaaagaaggggccaccagcctagtattg
gaggagaaagataaagcagatactgtgaagtcggaacaggctgccaaggaatccaccaaa
aaaacaaaagaagtggatgaaagtaagggtcccacaaacccagtggctactgcacagcag
aggggaagagctacaaacaaggaagaaaaactagtaagacaaagatcatcatctaatgat
tcctcgtcgtcagaatcggactctcggtcctcgtcttctcggtcctctggctcatccaca
tcctttcaagagaagacctgctccacttcaagaattagaagggatggtacacctgaaaga
gattcctcaccacagcacagggtgacacaagaggctcaggctgagggtttaaaggaaaca
ccaaaagcctcccctggcaaaagagagatgtctgtagagaagagtaacgcaactgctgat
ggagacagtcacaccaagaaaccattcattgaagcaccaaccagagaggcgtcccaaagg
aagaaggacaacgagagagaggagaaaacggacaaacaaagacaactgaaggagactgcc
atggcagagccggagaagcttccagagaccagtgaggagacaccaaagggcttctctgct
cgtaagatctctattagcagcagtaaattgtccccaggcactggcagtgcagagggtgag
caagactctggggccgcagccggtcgcaagaggaggtggggctccagcacagctgtcact
gccaagaaaccttcaatcagcatcaccacagattcactcaagtctctgattccagacatt
cgcccgtgtctcgggcaggaggcagtagtggacctgcacccagaggaagctgtcctctct
ggtgctgaggatgaagagagggagtgctctgaccaggatcttcagatccgtcggactgtc
acacaggtggtgcactcagagagccaggagaatggagagaaagagacaaagaggagcaga
catgatgagctggaggaggatgaaccacagggagacacagagatgacaaggacccacgaa
gagaagatggacacctcatttcctggagccgtggaaagccagtctccatcacattccagc
catgatgtagaaactaacactgtgacccccagcgacaccctcattcgccgctccatcagc
cagcaaaaaacgggtgtttccatcacaatcgatgaccctgttcgcacggcccggcagccc
tcaccacctcgcggcaaggtctccaacattgttcacatcagcaacctggtgaggcccttc
actctggggcagttaaaggaactgctcggcagaacaggcaccctggtggaggagggcttc
tggattgacaaaatcaagtctcactgctatgtcacttactgtagctcagatgaggcagtt
gctactcgggcagctcttcatggagttaaatggcctcagagcaacccaaaagtccttaac
gtagacttctgccagcaggatgagctggacttccaaaaaggcttgggtgtagctggcaaa
cccggagcagaggaacgggggcctggctctggccgtggtcggacatcggctttgccctct
ctcctccctgagcgagaccagtgggccgagcgtgagcgtgagatggagcgccgagagaag
gctagagcagagcgggagtgggatcgcgacaaggtccgagagtttggaaaacccggtgaa
gagaaggaggaaggtccccgtaggtcacgctccagagagaggcgccgcaaggagagggga
aagagcaaggagaagaagactgagaagaaggagaaaatggctgaggatccccctgcaaag
ctgcttgatgatctgttccgcaaaactaaagcagctccttgcatatactggcttccactt
acagaggaacagtttgtccaacgggaagctgccaaagcagaacggatgaaggagcgtgag
aaacggaggaaggagcaagatgaagaggaggagaaaaaaagggaagaggagcgcaaggag
agggtgaaagctggaggcggcccacctggagaacgaagtgagggtgagaaggagaaggaa
aaggaaaaggaaaaagaaaaggaaaaggacagagacggagagagggacagagacagagat
cgaggtagagacagggagagggagagggagagggtgagggagaatgacaaacgcagggat
gcctaccgtaggccagagggccgtgcagcaggcgtgggcagacgctcacgcagccgcagc
gacccgcgagaaaggcgacgttaa
DBGET
integrated database retrieval system
