Etheostoma cragini (Arkansas darter): 117954032
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Entry
117954032 CDS
T07493
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117954032
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117954032
09142 Cell motility
04820 Cytoskeleton in muscle cells
117954032
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117954032
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117954032
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117954032
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117954032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117954032
NCBI-ProteinID:
XP_034743378
LinkDB
All DBs
Position
12:complement(17299488..17324029)
Genome browser
AA seq
1657 aa
AA seq
DB search
MVSDPVFPLCVKMQCPLCLCNGVKGSRGDKGFPGVEGPPGPKGRPGADGYPGPSGPKGNT
GPDGPVGPKGNQGPEGKEGFAGSHGLPGVPGLQGPPGPPGAPGCNGTDGEDGPPGIPGAP
GLDGPAGPTGRPGPKGEPLVSVDASQVPAGPRGRDGEMECPGIPGEVGLPGYPGPRGSSG
FPGRAGAAGSKGQEGIGGIPGPRGPQGRPGPRGPPGPPGQINEFFTGSLPLKGEKGNRGD
VGEKGCIGAPGDPGDGHYTKGAKGDQGPEGPEGKPGKDGDPGRALRGRPGVLGDPGFTGT
PGATGEKGDRGPPGPAGDIFWILTESLKGYPGDPGFPGFPGLPGHQGIDGFPGPDGPPGH
SSGIYVPGPPGPKGYPGPKGDPGEPGGIFQGPPGLDGDYGDEGPPGDPGPPGHPEDRTSR
TIKGLQGRKGMKGAPGPTGYDGVYGMKGERGESCYECIGSAPPGPPGPRGLPGIPGYNQG
PGATGDPGFPGPSGLPGRPGPIGEMGFQGPPGQIGESYSNNSPGIKGEKGDPGPPGRPGA
EALPGFPGQPGRKGNQGPPGDSYPFAGEEGDRGFPGPPGPSGRPGLPGYPGPVGYGPPGI
PGRMGDVGVPGLPGPSGIPGQKGEPSHIHTKGHPGPPGFPGLPGSPGHPGNHGALGTPGV
TGVRGQKGEKGEVSRPGWPGVPGQKGDKGQPGVPGLSVRGFPGRSGSQGVPGPEGQKGDS
GPGYPGFPGLPGSPGEDGEQGPVGDPGIPGLPGNPGLNGNPGYPGEKGNKGSVGFPGPPG
NKDLCEGSLPGPRGEPGPDGYPGHPGPNSSPGEKGTPGLPGFGRPGFPGEPGVPGPSVPG
LPGLIGPKGIKGQNGLPGQPGLRGDPGLDGLPGYITDGLPGIIGPPGQIGAPGPDGARGP
QGPPGMKGEPGFRGPPGPSTQLFDLVGPPGEPGNPGYPGLSGARGDTGSVGPKGQRGVDG
APGSPGQPGPQGDPGVSRLTEGSRGPAGAPGDPGVRGPPGPTGTKGDQGISGRPGCNGAS
GPTGNKGVKGDPNYYGYGLPGPVGQKGEPGSPSTNARKGQKGEAGSIGVPGLPGSRGAKG
NPGSVGQNGLPGYEGLQGSDGPPGSKGQQGPNGRPGDPGHPGVSGYPGPKGNQGRDGIPG
SPGQKGDTNIVVGTPGGRGETGQQGPPGNPGPPGLPDTGSPGPIGDRGFPGSPGACGPNG
LPGTDGACLPGLKGDQGRPGFPGSPGYPGPPGRPGPPVPGLKGDRGDPGLTGGRGYSGPS
GDPGPQGPPGPRGRPGGQGPRGDPGPPGVHGPPGGKGEPGYDPGPPGPPGMKGFPGRPGS
KGHATMAQVIYEPGPPGSPGPPGNRGAPGSTGPSGPVGQPGQPGVKGQRGVAGPDGLPGF
TGRKGDKGRAGLPGPVGRIGDPGNKGPQGLPGGGCPGFIDSFLIARHSQSTRVPDCPHGS
NLIYSGYSFLFINGNERAHGQDLGTMGSCLPHFSTMPFLFCDTESNCRYASRNDYSYWLS
TDSPMPANMVSITGERLASYISRCSVCETTSNVIAVHSQTTLIPVCPRGWESLWTGHSFV
MQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLASLDPNRMFSK
PVPQTVKGPSIQSVISRCRVCRKLWQPDTDDKCGDNL
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagacccagtgttcccgttgtgtgtgaagatgcagtgtcctctgtgtctgtgc
aatggagtgaaaggcagcaggggagacaaaggttttccaggcgttgaaggtcccccaggg
ccaaagggccgtccaggagccgatggttatcctgggccttcgggaccaaagggcaacact
gggcctgatggacctgtggggccaaaaggcaatcagggacctgaaggcaaagaaggattt
gccgggtctcacggtttaccgggagtcccaggtttacaaggccctccaggacccccaggg
gcaccaggctgcaatggaacggatggagaggatggaccgcctggtattcccggggccccg
ggccttgatggacctgcaggtccaactggccggcctggacctaagggtgaacctttggta
tcagtggatgcatcgcaagtgcctgctgggccacgtgggagggacggagagatggaatgt
ccaggtattcccggagaggtaggactaccagggtaccctggaccaaggggctcaagcggt
tttcctggccgtgctggggcagcaggatctaagggtcaagaaggcataggcggtatccct
ggacctcgtggaccacagggacgaccaggaccacgagggccccccgggccaccaggtcag
atcaatgagtttttcaccgggagtctcccattaaagggtgaaaagggaaacagaggagat
gtaggagaaaagggctgcattggtgcaccaggagaccctggtgatggccattacaccaaa
ggagcaaagggagaccaaggaccggaaggtccagaaggaaagccagggaaggatggtgat
cctggacgagcattaaggggaagacctggcgtcctaggggatccaggatttacaggaaca
ccaggagcgacgggtgaaaagggagatagggggccccctggtccagctggagatatattt
tggattttgactgaatcactcaaaggataccccggagatcctggtttcccaggcttccct
ggactccctgggcatcaaggtattgacggatttcctggaccggatggacctccaggtcat
tcatctgggatttatgtgcctggcccacctggtcccaaaggttatccaggccccaaaggt
gaccctggggagcctgggggtatttttcaaggacccccaggtctagatggggattatggt
gatgaagggcctcccggagatcctggcccacctggacatcctgaagacagaactagcagg
actatcaaaggtctccaaggaaggaagggaatgaagggtgcgcctggacctaccggatat
gatggggtgtatggaatgaaaggggagaggggggagtcctgttatgagtgtattggatca
gcacccccaggaccaccaggtccccgtggtctacctggcattccaggatacaatcaggga
ccaggtgcaacaggtgatccaggttttccaggacctagtggcttacctggaagaccaggt
cctattggtgaaatgggatttcaagggcctccaggacaaataggagaatcatattccaac
aacagtcctgggataaaaggagagaaaggtgatcctggaccgcctggcaggcctggtgca
gaagccctccctgggtttcctggacaaccaggtcgtaaaggcaatcaagggcctccaggg
gattcgtatcccttcgctggggaagaaggagaccgtggtttcccaggtccacccgggcct
tcaggaagaccgggactacctggctaccctgggccagtgggatatgggcctcctggaatt
ccaggaagaatgggcgatgttggggtacctggcctgccagggccgtctggaattccaggc
cagaaaggcgaaccaagccacatccacaccaaaggacatcctggaccacctggatttcca
ggtcttcctggttcacctggacacccaggtaatcacggagcactgggtaccccaggagta
acaggtgttcgaggacagaaaggcgaaaagggggaggtgtcacgtcctggatggccgggt
gtcccaggacagaaaggtgacaaggggcagccaggtgtcccaggcctttcagttaggggc
tttcctggtcggtcaggttcacaaggcgttcctggtcctgagggacaaaagggtgatagt
ggccctggataccctggcttccctggactcccagggtctccaggagaagatggagaacaa
ggtcctgtaggagatcctgggatccctggcctacctgggaacccaggactaaatggcaat
cctggttatccaggagaaaagggaaataaaggttctgtagggtttccgggaccacctggt
aataaggatttatgtgaaggtagtttacctggacctaggggagaaccaggaccagatggt
tatccaggacatccaggacctaacagctcccccggagagaaggggaccccaggtttgcca
gggtttggtcgccctggattccccggtgaacctggtgtccccggcccatcagtgccaggt
ctccctggcctaattggaccaaaagggatcaagggacaaaacggactgcccggtcaacca
ggactgagaggagaccctggactagacgggttaccaggatacataactgacgggttgcct
ggaattataggaccaccaggccaaataggtgcccctggcccagatggggccagaggtcct
cagggtccaccaggcatgaagggtgaaccaggtttcagaggtcctccaggcccctcaaca
caactattcgacttagtcggccccccaggggagcctggcaatccaggttaccctggtttg
tctggtgcccgtggagatactggaagtgttgggccaaaagggcagagaggtgtagatgga
gcaccagggagtcccggacaaccaggtccccaaggtgatccaggtgtaagtagactcaca
gaaggaagtcgaggacctgctggagctccaggggacccaggagtcagggggcctccaggc
ccaacgggaacaaagggagatcaaggaatctctggaaggccaggttgcaatggtgcatca
ggtccaactggtaacaaaggagttaagggagatccaaactactatggatatggactgcct
ggaccagtaggacaaaagggtgaaccaggatcacccagcactaatgcgaggaagggtcaa
aaaggtgaagctggttctattggagttccgggtttaccaggaagccgtggagcaaaagga
aacccggggtctgttggacaaaatggtttaccaggctatgaagggcttcaaggttcagac
gggcctccaggaagcaaaggacagcaaggacccaacggacggccaggtgacccaggccat
ccgggtgtcagcggttatccaggtcctaaaggcaatcagggccgggatgggattcctggc
tctccagggcagaaaggggacactaacatcgtagtagggacgcctggtggtcgtggtgaa
acaggtcaacaaggtccccccgggaaccccggtccccctggcttgcctgacactgggagt
cctggaccaataggtgacagaggatttccaggttcacctggggcctgtggtccaaatgga
ctaccaggaaccgacggggcttgtcttcctggattaaaaggagaccaaggtcgtcctggc
tttcctggcagcccaggctatcctggcccacctggccgtccaggtcccccagtgcctggg
ttaaaaggagacagaggggacccaggtcttacaggaggcagaggctatagtggacccagt
ggagatccgggcccacaaggaccacctggtccaagaggtagacccggaggtcaaggacca
agaggtgatcctggtcctcctggagtccatggaccccctggtggcaagggagaacccgga
tacgacccaggtccaccgggtccacctgggatgaaaggttttcccggacgaccaggctcc
aaaggtcatgcaacaatggcccaggtgatatatgaaccaggacctcctggctcacctggt
ccccctggcaaccgaggagctccagggagcactggaccatcaggaccagtaggccaacca
ggtcagccaggcgtcaaaggacagcgtggtgttgccggcccggatggcctgcccggattc
actggccgcaaaggagacaaaggaagagcaggactgccaggtccagtaggcagaattgga
gacccaggcaacaaaggtcctcaagggttgccaggcggaggttgtccaggttttattgac
agtttcctaatagctagacacagtcagagcacccgcgttcctgactgtcctcatggcagc
aacctcatctactctggttactccttcctcttcatcaacggaaatgagagagctcacggt
caggaccttggtaccatgggaagctgtctccctcatttctccaccatgcccttcctgttc
tgtgacacagaaagtaactgccgctatgcttctcgtaatgactactcctactggttgtcc
actgactctcctatgcctgcaaacatggtttccatcacaggggaaaggctggcttcctac
atcagcaggtgctcagtgtgtgaaactacctccaatgtcatagccgtccacagccagaca
actctgattcctgtgtgtccccgaggttgggagtcactatggaccggacactcatttgtc
atgcaaacgggtgctggagcagaaggctcctcccagcccttggtttctcctggctcctgt
ctggaaagtttccgccaagtgcctttcatcgagtgtcacggcaggggaacgtgtaactac
taccctgattcctatagctactggctggcctctctagaccccaaccgcatgttcagtaaa
cctgttcctcagacagtgaagggaccttcgatacaaagtgtcatcagccgttgtcgtgtc
tgcaggaaactatggcaacctgatacagatgacaaatgtggggacaatctttaa
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