Etheostoma cragini (Arkansas darter): 117954032
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Entry
117954032 CDS
T07493
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04382
Cornified envelope formation
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117954032
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117954032
09142 Cell motility
04820 Cytoskeleton in muscle cells
117954032
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117954032
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117954032
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117954032
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117954032
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117954032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117954032
NCBI-ProteinID:
XP_034743378
LinkDB
All DBs
Position
12:complement(17299488..17324029)
Genome browser
AA seq
1657 aa
AA seq
DB search
MVSDPVFPLCVKMQCPLCLCNGVKGSRGDKGFPGVEGPPGPKGRPGADGYPGPSGPKGNT
GPDGPVGPKGNQGPEGKEGFAGSHGLPGVPGLQGPPGPPGAPGCNGTDGEDGPPGIPGAP
GLDGPAGPTGRPGPKGEPLVSVDASQVPAGPRGRDGEMECPGIPGEVGLPGYPGPRGSSG
FPGRAGAAGSKGQEGIGGIPGPRGPQGRPGPRGPPGPPGQINEFFTGSLPLKGEKGNRGD
VGEKGCIGAPGDPGDGHYTKGAKGDQGPEGPEGKPGKDGDPGRALRGRPGVLGDPGFTGT
PGATGEKGDRGPPGPAGDIFWILTESLKGYPGDPGFPGFPGLPGHQGIDGFPGPDGPPGH
SSGIYVPGPPGPKGYPGPKGDPGEPGGIFQGPPGLDGDYGDEGPPGDPGPPGHPEDRTSR
TIKGLQGRKGMKGAPGPTGYDGVYGMKGERGESCYECIGSAPPGPPGPRGLPGIPGYNQG
PGATGDPGFPGPSGLPGRPGPIGEMGFQGPPGQIGESYSNNSPGIKGEKGDPGPPGRPGA
EALPGFPGQPGRKGNQGPPGDSYPFAGEEGDRGFPGPPGPSGRPGLPGYPGPVGYGPPGI
PGRMGDVGVPGLPGPSGIPGQKGEPSHIHTKGHPGPPGFPGLPGSPGHPGNHGALGTPGV
TGVRGQKGEKGEVSRPGWPGVPGQKGDKGQPGVPGLSVRGFPGRSGSQGVPGPEGQKGDS
GPGYPGFPGLPGSPGEDGEQGPVGDPGIPGLPGNPGLNGNPGYPGEKGNKGSVGFPGPPG
NKDLCEGSLPGPRGEPGPDGYPGHPGPNSSPGEKGTPGLPGFGRPGFPGEPGVPGPSVPG
LPGLIGPKGIKGQNGLPGQPGLRGDPGLDGLPGYITDGLPGIIGPPGQIGAPGPDGARGP
QGPPGMKGEPGFRGPPGPSTQLFDLVGPPGEPGNPGYPGLSGARGDTGSVGPKGQRGVDG
APGSPGQPGPQGDPGVSRLTEGSRGPAGAPGDPGVRGPPGPTGTKGDQGISGRPGCNGAS
GPTGNKGVKGDPNYYGYGLPGPVGQKGEPGSPSTNARKGQKGEAGSIGVPGLPGSRGAKG
NPGSVGQNGLPGYEGLQGSDGPPGSKGQQGPNGRPGDPGHPGVSGYPGPKGNQGRDGIPG
SPGQKGDTNIVVGTPGGRGETGQQGPPGNPGPPGLPDTGSPGPIGDRGFPGSPGACGPNG
LPGTDGACLPGLKGDQGRPGFPGSPGYPGPPGRPGPPVPGLKGDRGDPGLTGGRGYSGPS
GDPGPQGPPGPRGRPGGQGPRGDPGPPGVHGPPGGKGEPGYDPGPPGPPGMKGFPGRPGS
KGHATMAQVIYEPGPPGSPGPPGNRGAPGSTGPSGPVGQPGQPGVKGQRGVAGPDGLPGF
TGRKGDKGRAGLPGPVGRIGDPGNKGPQGLPGGGCPGFIDSFLIARHSQSTRVPDCPHGS
NLIYSGYSFLFINGNERAHGQDLGTMGSCLPHFSTMPFLFCDTESNCRYASRNDYSYWLS
TDSPMPANMVSITGERLASYISRCSVCETTSNVIAVHSQTTLIPVCPRGWESLWTGHSFV
MQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLASLDPNRMFSK
PVPQTVKGPSIQSVISRCRVCRKLWQPDTDDKCGDNL
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagacccagtgttcccgttgtgtgtgaagatgcagtgtcctctgtgtctgtgc
aatggagtgaaaggcagcaggggagacaaaggttttccaggcgttgaaggtcccccaggg
ccaaagggccgtccaggagccgatggttatcctgggccttcgggaccaaagggcaacact
gggcctgatggacctgtggggccaaaaggcaatcagggacctgaaggcaaagaaggattt
gccgggtctcacggtttaccgggagtcccaggtttacaaggccctccaggacccccaggg
gcaccaggctgcaatggaacggatggagaggatggaccgcctggtattcccggggccccg
ggccttgatggacctgcaggtccaactggccggcctggacctaagggtgaacctttggta
tcagtggatgcatcgcaagtgcctgctgggccacgtgggagggacggagagatggaatgt
ccaggtattcccggagaggtaggactaccagggtaccctggaccaaggggctcaagcggt
tttcctggccgtgctggggcagcaggatctaagggtcaagaaggcataggcggtatccct
ggacctcgtggaccacagggacgaccaggaccacgagggccccccgggccaccaggtcag
atcaatgagtttttcaccgggagtctcccattaaagggtgaaaagggaaacagaggagat
gtaggagaaaagggctgcattggtgcaccaggagaccctggtgatggccattacaccaaa
ggagcaaagggagaccaaggaccggaaggtccagaaggaaagccagggaaggatggtgat
cctggacgagcattaaggggaagacctggcgtcctaggggatccaggatttacaggaaca
ccaggagcgacgggtgaaaagggagatagggggccccctggtccagctggagatatattt
tggattttgactgaatcactcaaaggataccccggagatcctggtttcccaggcttccct
ggactccctgggcatcaaggtattgacggatttcctggaccggatggacctccaggtcat
tcatctgggatttatgtgcctggcccacctggtcccaaaggttatccaggccccaaaggt
gaccctggggagcctgggggtatttttcaaggacccccaggtctagatggggattatggt
gatgaagggcctcccggagatcctggcccacctggacatcctgaagacagaactagcagg
actatcaaaggtctccaaggaaggaagggaatgaagggtgcgcctggacctaccggatat
gatggggtgtatggaatgaaaggggagaggggggagtcctgttatgagtgtattggatca
gcacccccaggaccaccaggtccccgtggtctacctggcattccaggatacaatcaggga
ccaggtgcaacaggtgatccaggttttccaggacctagtggcttacctggaagaccaggt
cctattggtgaaatgggatttcaagggcctccaggacaaataggagaatcatattccaac
aacagtcctgggataaaaggagagaaaggtgatcctggaccgcctggcaggcctggtgca
gaagccctccctgggtttcctggacaaccaggtcgtaaaggcaatcaagggcctccaggg
gattcgtatcccttcgctggggaagaaggagaccgtggtttcccaggtccacccgggcct
tcaggaagaccgggactacctggctaccctgggccagtgggatatgggcctcctggaatt
ccaggaagaatgggcgatgttggggtacctggcctgccagggccgtctggaattccaggc
cagaaaggcgaaccaagccacatccacaccaaaggacatcctggaccacctggatttcca
ggtcttcctggttcacctggacacccaggtaatcacggagcactgggtaccccaggagta
acaggtgttcgaggacagaaaggcgaaaagggggaggtgtcacgtcctggatggccgggt
gtcccaggacagaaaggtgacaaggggcagccaggtgtcccaggcctttcagttaggggc
tttcctggtcggtcaggttcacaaggcgttcctggtcctgagggacaaaagggtgatagt
ggccctggataccctggcttccctggactcccagggtctccaggagaagatggagaacaa
ggtcctgtaggagatcctgggatccctggcctacctgggaacccaggactaaatggcaat
cctggttatccaggagaaaagggaaataaaggttctgtagggtttccgggaccacctggt
aataaggatttatgtgaaggtagtttacctggacctaggggagaaccaggaccagatggt
tatccaggacatccaggacctaacagctcccccggagagaaggggaccccaggtttgcca
gggtttggtcgccctggattccccggtgaacctggtgtccccggcccatcagtgccaggt
ctccctggcctaattggaccaaaagggatcaagggacaaaacggactgcccggtcaacca
ggactgagaggagaccctggactagacgggttaccaggatacataactgacgggttgcct
ggaattataggaccaccaggccaaataggtgcccctggcccagatggggccagaggtcct
cagggtccaccaggcatgaagggtgaaccaggtttcagaggtcctccaggcccctcaaca
caactattcgacttagtcggccccccaggggagcctggcaatccaggttaccctggtttg
tctggtgcccgtggagatactggaagtgttgggccaaaagggcagagaggtgtagatgga
gcaccagggagtcccggacaaccaggtccccaaggtgatccaggtgtaagtagactcaca
gaaggaagtcgaggacctgctggagctccaggggacccaggagtcagggggcctccaggc
ccaacgggaacaaagggagatcaaggaatctctggaaggccaggttgcaatggtgcatca
ggtccaactggtaacaaaggagttaagggagatccaaactactatggatatggactgcct
ggaccagtaggacaaaagggtgaaccaggatcacccagcactaatgcgaggaagggtcaa
aaaggtgaagctggttctattggagttccgggtttaccaggaagccgtggagcaaaagga
aacccggggtctgttggacaaaatggtttaccaggctatgaagggcttcaaggttcagac
gggcctccaggaagcaaaggacagcaaggacccaacggacggccaggtgacccaggccat
ccgggtgtcagcggttatccaggtcctaaaggcaatcagggccgggatgggattcctggc
tctccagggcagaaaggggacactaacatcgtagtagggacgcctggtggtcgtggtgaa
acaggtcaacaaggtccccccgggaaccccggtccccctggcttgcctgacactgggagt
cctggaccaataggtgacagaggatttccaggttcacctggggcctgtggtccaaatgga
ctaccaggaaccgacggggcttgtcttcctggattaaaaggagaccaaggtcgtcctggc
tttcctggcagcccaggctatcctggcccacctggccgtccaggtcccccagtgcctggg
ttaaaaggagacagaggggacccaggtcttacaggaggcagaggctatagtggacccagt
ggagatccgggcccacaaggaccacctggtccaagaggtagacccggaggtcaaggacca
agaggtgatcctggtcctcctggagtccatggaccccctggtggcaagggagaacccgga
tacgacccaggtccaccgggtccacctgggatgaaaggttttcccggacgaccaggctcc
aaaggtcatgcaacaatggcccaggtgatatatgaaccaggacctcctggctcacctggt
ccccctggcaaccgaggagctccagggagcactggaccatcaggaccagtaggccaacca
ggtcagccaggcgtcaaaggacagcgtggtgttgccggcccggatggcctgcccggattc
actggccgcaaaggagacaaaggaagagcaggactgccaggtccagtaggcagaattgga
gacccaggcaacaaaggtcctcaagggttgccaggcggaggttgtccaggttttattgac
agtttcctaatagctagacacagtcagagcacccgcgttcctgactgtcctcatggcagc
aacctcatctactctggttactccttcctcttcatcaacggaaatgagagagctcacggt
caggaccttggtaccatgggaagctgtctccctcatttctccaccatgcccttcctgttc
tgtgacacagaaagtaactgccgctatgcttctcgtaatgactactcctactggttgtcc
actgactctcctatgcctgcaaacatggtttccatcacaggggaaaggctggcttcctac
atcagcaggtgctcagtgtgtgaaactacctccaatgtcatagccgtccacagccagaca
actctgattcctgtgtgtccccgaggttgggagtcactatggaccggacactcatttgtc
atgcaaacgggtgctggagcagaaggctcctcccagcccttggtttctcctggctcctgt
ctggaaagtttccgccaagtgcctttcatcgagtgtcacggcaggggaacgtgtaactac
taccctgattcctatagctactggctggcctctctagaccccaaccgcatgttcagtaaa
cctgttcctcagacagtgaagggaccttcgatacaaagtgtcatcagccgttgtcgtgtc
tgcaggaaactatggcaacctgatacagatgacaaatgtggggacaatctttaa
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