Etheostoma cragini (Arkansas darter): 117954233
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Entry
117954233 CDS
T07493
Symbol
rc3h1b
Name
(RefSeq) roquin-1b isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117954233 (rc3h1b)
04121 Ubiquitin system [BR:
ecra04121
]
117954233 (rc3h1b)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117954233 (rc3h1b)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117954233 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
zf-RING_6
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
117954233
NCBI-ProteinID:
XP_034743741
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All DBs
Position
12:17209046..17223377
Genome browser
AA seq
1134 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEHLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDEGLPLDVAVTRKPS
PLTNGSGGHSLPQLIARGTDTVPYELLRKPMKMDGGSHSAPGSPPDGMDPGLPKPGMPLP
PHAMAHQRMPVDHLSGVKHMPVVARGSPVYTQPPHPEMCYDTRPPPSASQYDPPQYSTGY
PYQQPQQYVPRDYMRNPPPPSESGPPYQDSYPGYGPPDRPYQASHSGPPFSYPHPPHHDR
GRHGSYTGPPPPPQPYPSQRDGLVRMSPAPLDMPPPSSGQANSLYHQEPSARDRYPPDGY
YTQNAQPPPMRAYGRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHP
FPSDYPPEYGEESSKNMVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTMDMM
NAEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKMGYQTTGPVQAMV
STPQNPSSKQMAMSAEYTYGSHGWGGASYPSHQTASSSQGHFSERLPMAATDREQLKIEL
QQVNQQINQQTQMRSMEAASNSLLLQREASALAGQPGQPGQGQVSVAQQQAKWPAGGATT
AVSSEQLSMELHQVEREIGKRTREMALQENQVAHEVQQYKMKTAENGQPEHKTQLEEISL
ALGEVSNGSSSLQESAVGGSMLSLTNKTSAMSQCSDPGATGSEMQKNGVVHSCS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgccccatctgcacacagaca
tttgaggagactgttcgtaggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacggccatcagcacagac
attgagcacctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggcccgg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacaccagaggtgtgggc
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgtcagctggttgaggaggagggtcgcgttagagccatgagagctgcccgctct
ctgggggagcgaaccgtcaccgaactcatcttgcagcatcagaatccacagcagctctcc
tccaatctgtgggctgctgtgcgtgcacgaggatgtcagtttctcggcccagccatgcag
gaggaagcgctaaagttggttcttcttgctctagaggatggctctgctctgtccaggaag
gtgttggttctctttgtggtccagagacttgagccacgcttcccgcaagcgtctaagacc
agcataggccatgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaaacgt
gatgaagattcatctctgatgcagctgaaagaggagttccgtacttacgaggctctgcgg
cgcgagcatgactctcagatagttcagattgccatggagggtgggctgcgcattgcacct
gaccagtggtcttctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
atagataagctgcagaccccggcgtcttttgctcagagtgtccaggagctgacgattgcc
ctgcagaggaccggagacccagccaaccttaacagactgcgtccccacctggagctatta
gccaacattgatcccagtcctgatgccccccctcccacatgggagcagcttgataaaggg
ttggtagcagtgaaaacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtataagacatacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgaggagccagttgcacctttgctcattctcag
gaagaactggaaaagtatcgtaaaatgaataagcgcctggcagctcgcctccctggctca
ggagggctcatgccagatgagggcctccctctcgatgtagcagtgacccgaaagccttca
ccccttaccaacggtagtggtggacactctttgccccagctcattgcccgtggcactgac
acagtcccatatgaactgttgcgtaaacccatgaaaatggatggagggagtcacagtgcc
ccaggatccccacctgatggcatggaccctgggctacccaaacctggtatgcctctgcca
cctcatgccatggcccaccaaaggatgccagtagaccacctctctggggtgaagcacatg
cctgtggtagccagaggttcaccagtgtatacccagccgccgcaccctgagatgtgctat
gacacccgcccaccaccttctgcttctcagtatgaccccccacaatactccacagggtac
ccctaccaacagccacaacagtatgtcccccgggattacatgcgtaaccctcctcccccc
agtgagtcaggacccccttaccaggactcctaccctggctacggtccaccagatcgcccc
taccaggcctctcactctggtccacctttctcttaccctcatcctccacaccatgaccga
ggtcgccacgggtcctacaccggcccaccacctccaccacagccttacccatctcagagg
gatggcctggtcagaatgagtcccgcacctctggatatgccccccccatcatcaggacag
gctaactccctttatcaccaggagcccagtgcccgtgatagataccctccagatggctat
tatacacagaatgcccagccgccacccatgagggcctatggcagggggccatcatatagt
ggttcacagcccagcctggactacctgcaccgacgtcggcaggagctgttatcccagctg
gaggaaaggaaggtcatctcccctccaccatttgctgcctcccccactctttctcatccc
tttcccagcgactaccctccagagtatggcgaggagagctccaaaaacatggtgaaatgc
agagagcctgactatgcagggcagtactctccctggtcttgtgaaaccattggctcctac
attggtacaaaggatgccaaacccaaagacgttatggttcctggtaccatggacatgatg
aatgcggaggctaagggtctgagggaaccatcgctggaggctcctcggaggggtgcagaa
gtcaaagatgatgaccctattatcccatttggcccccagcctactgtgtcgcgcttcggg
gccatttcccgcacttcaaagatgggctaccagaccacaggccctgtgcaggctatggtc
tccacgcctcagaacccaagctctaaacaaatggccatgtcagcagaatacacatatggg
agccatggatggggtggagcttcatacccctcccaccagactgcctcctcctctcaggga
catttcagtgagcgcctacctatggcagccacagacagagaacagttgaagattgagctg
caacaggtcaaccagcagatcaaccaacagacccaaatgcgaagcatggaggctgccagt
aactctttactgctgcagagggaggccagtgcattggcaggccagcctgggcagcccggc
cagggccaggtgtcagtagctcagcagcaggccaagtggccggcagggggagcaacaaca
gctgtctccagcgaacagctgagcatggagctccaccaggtggagagagagattggcaag
aggacccgtgagatggctttgcaggaaaaccaagtagcccatgaggttcagcagtacaag
atgaaaacagcagagaatggacaaccagagcacaaaactcagctggaagaaatctccctg
gctcttggcgaggtgtcaaatggctccagcagtctgcaagaaagtgcagtgggcgggtcc
atgctgtcactgaccaataagacgtctgcaatgagccagtgctctgatccaggtgccact
gggtcagagatgcagaagaatggcgtcgtccattcctgctcttag
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integrated database retrieval system
