Etheostoma cragini (Arkansas darter): 117954312
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Entry
117954312 CDS
T07493
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117954312 (tnn)
04518 Integrin signaling
117954312 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117954312 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117954312 (tnn)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117954312 (tnn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Fn3_Dep-1_3rd
Fn3_PBP1
FN3_DSCAM-DSCAML_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_2nd
EGF
DUF7949
DNApolII_insertion
Motif
Other DBs
NCBI-GeneID:
117954312
NCBI-ProteinID:
XP_034743900
LinkDB
All DBs
Position
12:complement(16875616..16925195)
Genome browser
AA seq
1120 aa
AA seq
DB search
MTTRLLWRALCPLVLICTVSPFGSATNHPDPSAPEQGVTFSHVYKIDIPGSSSCKLERLP
TQDETGLQTETTTNGENDIIFRHNIRLLTPTCDCAESESFKSLLYRVNGLEEEVNYLKTQ
CTQGCCGSGGAAGVDKSCSGYGTYQPDTCSCLCNPGWEGPDCSVSSCPDECNDNGRCVDG
KCVCHQGYTGEDCSQLMCPDNCNDKGQCVDGKCVCFPHFTGEDCSVQKCPNDCIGNGQCV
DGQCICEEGFFGEDCSLVLGPQGLRLVQLTDVSLLVEWDSVRGAEYYILTYHPKDDKGAL
EQVQVPNTESSYLITGLTPGVTYIVQVYAVIKEIQSEADTIEATTDVSAIDGIRVLGQTE
ISIQVDWKNPSAEVDLFRLKHTDPAGQEEALNVQRSQEARTKHTIVGLFPGTEYQISVQA
IKGTTEGKPSSVTGATDIDAPNNLVTTEVTEDTATVSWDRVQAEIEGYMLSYTSAEGSST
DIPVGRDSTLYRLVGLKPGVLHTVYIWAFKGDKVSSKSSTEAETELDAPTNILARDETES
SFRVSWDPTQAEIDGYTLTYSSSQGSSEEIPVGSDSTSYMLTGLRPGVPYTVYIWAIKGS
KVSRKISTKAETDLDAPANLLARDMTETSFSVSWDPAQAEIDGYLVTYSSSEGYSGEIPV
GPDSTSLMLTSLRPGVLYTVYIWAIKGNKASRKISTQAQTELDAPANLLAQDETETTFSL
SWDPVQAEIDGYILTYSSSEGFSEEIPVGSDSRSYMLTGLRPGVLYTVYIWAIKGSKGSR
KISTKAETDIDAPKDLKATDVTLDSAFLTWVPPLADIEGYSLSYRDEDGNMEMVEKRLGA
SENSFAVASLETGKRYIVTIIAYTENKRSKVVETVFRTVGLMYPFPMDCVQIMKNGNKKS
AIYTVYINNDRSKPIEVYCDMETDGGGWLVLQRRTVGKLDFMKRWKQYIIGFGNMTDEFW
IGLDKIYELTNTPTQYELRFDLGLGAERAFAVYDNFKIAPVKQKFQLTIGKYSGTAGDAM
TYHQGRPWTTIDNDNDIALGNCALTHRGAWWYKNCHLANPNGKWGDNRHSLGVNWEPWKG
HLVSLDFTEMKIRPVGALYSRKRRSLMAREKSRTTNLQKK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaagactcctgtggcgggccctgtgcccgctggtcctaatctgcactgtgtca
ccctttggctcggccaccaatcacccggacccctcagccccagagcagggagtcaccttt
agccacgtctacaaaatcgacatcccaggaagctccagttgtaaacttgaacgtctgcca
actcaggacgaaacaggtctgcagacagagaccactacgaatggagagaacgacatcatc
ttcagacataacatcaggctgctgacaccaacgtgtgactgtgcggaatcagaaagtttc
aagtcactcttgtacagagtcaacgggctggaagaagaagtcaactacctaaagacccag
tgtactcagggatgctgtggaagtggtggggctgcaggagtggacaagagctgcagtggc
tatggtacctaccagcccgacacctgcagctgcctctgtaacccaggatgggaaggccca
gattgctcagtgtcctcctgccctgacgagtgcaatgacaacggccgatgtgtggatgga
aagtgtgtgtgccaccagggctacacaggagaggattgcagccagctgatgtgtccagac
aactgcaacgacaagggacaatgcgtggatggaaaatgtgtgtgtttcccgcacttcacc
ggcgaggattgcagtgtccagaagtgtcccaatgactgcattggtaatggccagtgtgtg
gacggccagtgcatctgtgaagaaggcttttttggagaagactgttcattagtcctcggc
cctcagggtctgcggttggtccagctaaccgacgtctcccttctggttgagtgggattca
gtccgtggggcagagtattacattttgacatatcatcccaaagatgataagggtgccctc
gagcaggtccaggttcccaacacagagagctcttacctcatcacaggactcactcctggg
gtcacctacattgtccaggtgtatgccgtcatcaaagaaattcaaagtgaagcagacacg
attgaagctaccacagatgtatccgctattgatggtatccgagttcttggccagacagaa
atctctatacaagtggactggaagaacccctcagctgaggtggatctcttcaggctcaaa
cacactgacccggcaggacaggaggaggcgctgaatgtacagaggagccaagaggcgcgc
accaaacacactattgttggtctgtttccaggaacagagtaccaaatctcagtgcaggct
atcaaaggaacaactgagggaaaaccatcctctgtcactggtgccacagacattgatgct
cctaacaacctggtcaccactgaagtaacagaggacactgcaacagtttcgtgggatcgt
gtccaggcagaaatagagggctacatgttgagctacacttcagctgagggctccagcacc
gacatccctgtgggacgtgacagcaccttgtacaggctggttggcttgaagcctggagtt
ctccacactgtctatatctgggccttcaagggagacaaagtcagcagcaagagttcaaca
gaggctgaaacagagctggatgctcctactaacatcttggcacgagatgaaactgagtcc
agcttcagggtgtcctgggatcccacccaggccgaaattgatggctacaccctaacctac
agctcctctcagggctcaagtgaggaaatcccggtcgggtctgacagtacttcgtacatg
ctgactggtctgaggcctggtgtcccctacactgtctacatttgggccatcaaggggagc
aaagttagcaggaagatctcaacaaaagctgagacagacctggatgctcccgctaacctc
ttagcccgagacatgacagagaccagcttcagcgtgtcatgggatccagcccaggctgaa
atagatggctacctcgtaacctatagctcttctgagggctatagtggggagatcccagtg
ggacctgacagcacctctttaatgctgactagtttgaggcctggggtcctctacactgtc
tacatctgggccatcaaaggaaacaaagccagcaggaagatctcaacacaagctcagaca
gaactggatgctcctgctaacctcttagcccaagatgaaacagagaccaccttcagcttg
tcatgggatccagtccaggcagaaattgatggctacatcctaacctacagctcctctgag
ggctttagtgaggagatcccggtcgggtctgacagcaggtcttacatgctgactggtctg
aggcctggtgtcctctacactgtctacatctgggcaatcaaggggagcaaaggaagcagg
aagatctcaacaaaagctgagacagatattgatgcccctaaggacctgaaggcgaccgat
gtgacgctggattctgctttcttgacttgggttcctcctctcgctgacattgaggggtac
agcctcagctacagagatgaggatgggaacatggagatggttgaaaagcggcttggagcc
agcgagaacagttttgctgtggccagtctggagacggggaagcgatatattgtcaccatc
attgcctacacggagaacaagaggagcaaggtggtagaaactgtcttcagaacagttggc
ctgatgtaccctttccccatggactgcgttcagatcatgaagaatggcaataaaaagagt
gctatctacacagtctatattaacaacgaccgctccaaacccattgaggtttactgcgac
atggagactgatggaggcggctggctggtgctccaacgacgtaccgttggcaagctggac
tttatgaaacgctggaaacagtacattatcgggtttggcaacatgacagacgagttctgg
attggtctggataagatatatgagctcaccaacactcctactcagtatgagctgaggttt
gacctgggactgggcgcagagagagcctttgctgtatatgacaactttaagattgcaccg
gtcaagcagaagttccagctcactatcggcaaatacagtgggacagcaggtgatgctatg
acctaccaccaaggccgaccctggactactattgataatgataacgacatcgctctgggt
aactgtgccctgacccaccgtggtgcctggtggtacaaaaactgtcacctggccaacccc
aatggaaaatggggcgacaacaggcacagtttgggagtgaactgggaaccatggaagggc
cacctagtatccctcgacttcacagagatgaagatccgtcctgtgggagccctgtacagc
aggaagaggcgatctttgatggccagagagaagagcagaaccacaaacctccaaaagaaa
taa
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