Etheostoma cragini (Arkansas darter): 117954413
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Entry
117954413 CDS
T07493
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117954413 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117954413 (exosc4)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117954413 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117954413 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117954413
NCBI-ProteinID:
XP_034744089
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Position
12:14726516..14728042
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AA seq
271 aa
AA seq
DB search
MGNVVERQTRGSVRCCLFGSFEVCGNMAGLELLSDQGYRLDGRKATELRKVQARMGVFAQ
ADGSAYLEQGNTKALAVVYGPHEIRGARSRIRHDRAVINCQYSMATFSTAERKRRPHGDR
KSTEMSLHLKQTFEAAVMTQLYPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMR
DYVCACTVGFVDETPLADLCYAEESGGVSSLALALLPRGGQIALLQMDARLHQDHLETLI
EAAMTACKGVSKVLDEVVRQHLQEVSVLSGE
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatgtagtagaacggcagacacgtgggtcggtacgttgctgtttgttcggttct
ttcgaagtttgcggaaacatggcgggcctggagctgctgtccgaccagggataccgttta
gatggaaggaaagccaccgagctgcggaaggttcaggcccgaatgggtgtgttcgctcag
gccgacggctctgcgtatttagagcagggaaacacgaaagctctggctgtggtttacggt
ccgcatgaaatacgaggtgcacgcagccgaattcgtcacgatcgagctgttatcaactgt
cagtacagcatggccacgttcagcacagcagagaggaagaggaggccacacggagaccgc
aagtcaactgagatgagcctccacctcaagcagacatttgaagctgctgtgatgacccag
ctctacccacgctctcaaatagacatctatgtcaagattctgcagtcagatggaggtaac
tacagcgtgtgtgtaaatgccgccaccctggcggtgatcgacgccggcatccccatgcga
gactatgtgtgtgcctgcacggtggggtttgtggatgagacgcccctcgctgacctttgc
tatgcggaggaaagtggaggagtgagctctctggccttagccctgctgccccggggcgga
cagatcgctctgctgcagatggacgccaggctacaccaggatcacttagagactctgatc
gaagccgccatgaccgcttgtaaaggggtgagcaaggtgctggatgaggtggtgcgacaa
catctccaagaagtttctgtcctctctggagagtga
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