KEGG   Etheostoma cragini (Arkansas darter): 117954497
Entry
117954497         CDS       T07493                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
  KO
K17302  coatomer subunit beta'
Organism
ecra  Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ecra04131]
    117954497 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ecra04147]
    117954497 (copb2)
Membrane trafficking [BR:ecra04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    117954497 (copb2)
Exosome [BR:ecra04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   117954497 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N HEAT_GCN1
Other DBs
NCBI-GeneID: 117954497
NCBI-ProteinID: XP_034744233
LinkDB
Position
12:complement(24794590..24803956)
AA seq 939 aa
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAVALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELVRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELGLQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
RDGKNNVAFMTYFLQGNLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKV
NQKAAESLADPTEYENLFPGLKEAFAAEHYLRESCLGTSRPAKDFPLVTLNEDRNILEEA
QGYEPKGTFIPAVPKQTQDSGESVAAAPVSAAVAAVSLQPEPAAAATAVDKEEEEEDIPE
YSQSQKDESLDELDVDLDNMELDDIDTTDVNLDDDFLDD
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgcctctgaggctggacatcaagcgcaggctgacagccaggtcagaccgagtgaagagt
gtggaccttcacccaaccgagccatggatgctggccagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagactctggtcaagacctttgaagtgtgtgacctccctgtc
agagcttctaagtttgtggcaaggaagaactgggtcattacaggagcggatgacatgcag
atccgagtgttcaactacaacactttggagcgtgtccatatgtttgaggcccactcggac
tacattcgttgcattgctgtccatccgacccagccctacatcctcaccagcagtgatgac
atgttgatcaagctatgggactgggacaagaagtggtcgtgcagccaggtgtttgagggt
cacactcactatgtcatgcagattgttatcaaccccaaggacaacaaccagtttgccagt
gcctccctagacaggacgattaaggtttggcagctaggctcttcatctcccaatttcact
ttggagggtcacgagaaaggagtcaattgtattgactactacagtggaggagacaagccc
tacctcatttcaggggctgatgaccgccaagtaaagatctgggactaccagaacaaaacc
tgtgttcagactctggagggccatgcccagaatgtctcttgcgtcagcttccaccccgag
ctgcccatcatcatcactggatcagaggatggtacggtgcggatctggcactcaagcact
taccgactggagagcactctcaactatggcatggagagagtgtggtgtgtgtgtggcctc
aggggctccaacaatgtggcactgggctacgatgaaggcagcatcattatcaaggtgggt
cgggaggagccggcaatgtccatggacacaaacggaaaaatcatctgggctaaacacagt
gaaatacagcaagccaacctgaaggccatgggtgatgccgagatcaaggacggagagcgg
ctgccattggctgtcaaagatatgggtagctgtgagatttaccctcaaaccatccagcat
aaccctaatggaaggtttgttgtggtgtgtggagatggagagtacatcatctatactgcc
gtggctttgaggaacaagagctttggctcagcgcaggagtttgcctgggcacatgactca
tctgaatatgccatccgggaaagcaacagtattgtcaaaatcttcaaaaatttcaaagaa
aagaaatcttttaaacctgactttggagctgaagggatctatggaggcttcttgcttggg
gttaggtcagtgaatggactggcattttatgactgggagaacacagagctggtgcgccgc
atcgagatccagcccaaacacatcttctggtcagactctggtgaactggtctgcatcgct
acagaggagtccttcttcattctgcgttatatgtcagagaaagtagctgcttctcaagag
aacaatgaaggggtgaccgaggatggtattgaagatgcctttgaggtccagggagagatc
caggagattgtgaagactgggctctgggtaggagactgcttcatctacaccagctctgtg
aaccggctcaactactatgtaggaggagagattgtcaccattgctcacctggacagaacc
atgtacctgctgggttacataccaaaagatgaccgtctgtacctgggagacaaggagctc
aacattgtcagctactccctgctggtctccgtcctggagtaccagactgcggtaatgagg
agggactttggaatggctgacaaggtgcttcccacaattcctaaagagcagcgtaccagg
gtggcccatttcctggagaaacagggcttcaagcagcaggcgctggctgtgtccaccgac
ccggaacaccggtttgagctggggttgcagctgggagagttgaagatagcttaccagctg
gctgtggaagcagagtcagagcagaagtggaagcagttagcggagctggctatcagcaag
tgccaattcagccttgcccaggagtgcctgcaccacgcccaggattatggtggcctgctg
ctcctggccacagcctccggtaacgccactatggtgggcaagctggctgagggggcagag
agggacggcaagaacaatgtggccttcatgacctacttcctgcaggggaatctggatcag
tgtttggagcttctgatcaggacaaaccgactgcctgaagctgccttcctggctcgcacc
tacctgcccagtcaggtgtcccgtgtggttaaattatggagggagaacctggctaaagtc
aaccagaaggcggccgagtctctagcagaccctacagagtacgagaatctgttccctggg
ctgaaagaagcctttgcagctgagcattaccttcgagagtcctgcttgggcacctctagg
cctgccaaagattttcctctcgtcacgctcaacgaagacaggaatattcttgaggaggct
cagggatacgagcccaaaggaaccttcattcctgctgtccccaagcagacacaggatagt
ggggagtcggtggcagcagcccccgtctctgcagcagtagcagctgtgtccttacagcct
gaacctgctgctgctgctacagcagtggacaaagaggaggaggaggaggacattccagag
tactcacagtcacagaaagacgagagtctggatgagctggatgtggacctggacaacatg
gagctggatgacatcgacaccacagacgttaacctcgatgatgactttctagacgactga

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