Etheostoma cragini (Arkansas darter): 117954497
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Entry
117954497 CDS
T07493
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117954497 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117954497 (copb2)
Membrane trafficking [BR:
ecra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117954497 (copb2)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117954497 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
DSE1_N
ASA1
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR41
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_IFT140_1st
TRM82_WD
Beta-prop_NOL10_N
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Aladin
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
PAC11
Beta-prop_ACSF4
CDPS
Motif
Other DBs
NCBI-GeneID:
117954497
NCBI-ProteinID:
XP_034744233
LinkDB
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Position
12:complement(24794590..24803956)
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AA seq
939 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAVALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELVRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELGLQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
RDGKNNVAFMTYFLQGNLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKV
NQKAAESLADPTEYENLFPGLKEAFAAEHYLRESCLGTSRPAKDFPLVTLNEDRNILEEA
QGYEPKGTFIPAVPKQTQDSGESVAAAPVSAAVAAVSLQPEPAAAATAVDKEEEEEDIPE
YSQSQKDESLDELDVDLDNMELDDIDTTDVNLDDDFLDD
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgaggctggacatcaagcgcaggctgacagccaggtcagaccgagtgaagagt
gtggaccttcacccaaccgagccatggatgctggccagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagactctggtcaagacctttgaagtgtgtgacctccctgtc
agagcttctaagtttgtggcaaggaagaactgggtcattacaggagcggatgacatgcag
atccgagtgttcaactacaacactttggagcgtgtccatatgtttgaggcccactcggac
tacattcgttgcattgctgtccatccgacccagccctacatcctcaccagcagtgatgac
atgttgatcaagctatgggactgggacaagaagtggtcgtgcagccaggtgtttgagggt
cacactcactatgtcatgcagattgttatcaaccccaaggacaacaaccagtttgccagt
gcctccctagacaggacgattaaggtttggcagctaggctcttcatctcccaatttcact
ttggagggtcacgagaaaggagtcaattgtattgactactacagtggaggagacaagccc
tacctcatttcaggggctgatgaccgccaagtaaagatctgggactaccagaacaaaacc
tgtgttcagactctggagggccatgcccagaatgtctcttgcgtcagcttccaccccgag
ctgcccatcatcatcactggatcagaggatggtacggtgcggatctggcactcaagcact
taccgactggagagcactctcaactatggcatggagagagtgtggtgtgtgtgtggcctc
aggggctccaacaatgtggcactgggctacgatgaaggcagcatcattatcaaggtgggt
cgggaggagccggcaatgtccatggacacaaacggaaaaatcatctgggctaaacacagt
gaaatacagcaagccaacctgaaggccatgggtgatgccgagatcaaggacggagagcgg
ctgccattggctgtcaaagatatgggtagctgtgagatttaccctcaaaccatccagcat
aaccctaatggaaggtttgttgtggtgtgtggagatggagagtacatcatctatactgcc
gtggctttgaggaacaagagctttggctcagcgcaggagtttgcctgggcacatgactca
tctgaatatgccatccgggaaagcaacagtattgtcaaaatcttcaaaaatttcaaagaa
aagaaatcttttaaacctgactttggagctgaagggatctatggaggcttcttgcttggg
gttaggtcagtgaatggactggcattttatgactgggagaacacagagctggtgcgccgc
atcgagatccagcccaaacacatcttctggtcagactctggtgaactggtctgcatcgct
acagaggagtccttcttcattctgcgttatatgtcagagaaagtagctgcttctcaagag
aacaatgaaggggtgaccgaggatggtattgaagatgcctttgaggtccagggagagatc
caggagattgtgaagactgggctctgggtaggagactgcttcatctacaccagctctgtg
aaccggctcaactactatgtaggaggagagattgtcaccattgctcacctggacagaacc
atgtacctgctgggttacataccaaaagatgaccgtctgtacctgggagacaaggagctc
aacattgtcagctactccctgctggtctccgtcctggagtaccagactgcggtaatgagg
agggactttggaatggctgacaaggtgcttcccacaattcctaaagagcagcgtaccagg
gtggcccatttcctggagaaacagggcttcaagcagcaggcgctggctgtgtccaccgac
ccggaacaccggtttgagctggggttgcagctgggagagttgaagatagcttaccagctg
gctgtggaagcagagtcagagcagaagtggaagcagttagcggagctggctatcagcaag
tgccaattcagccttgcccaggagtgcctgcaccacgcccaggattatggtggcctgctg
ctcctggccacagcctccggtaacgccactatggtgggcaagctggctgagggggcagag
agggacggcaagaacaatgtggccttcatgacctacttcctgcaggggaatctggatcag
tgtttggagcttctgatcaggacaaaccgactgcctgaagctgccttcctggctcgcacc
tacctgcccagtcaggtgtcccgtgtggttaaattatggagggagaacctggctaaagtc
aaccagaaggcggccgagtctctagcagaccctacagagtacgagaatctgttccctggg
ctgaaagaagcctttgcagctgagcattaccttcgagagtcctgcttgggcacctctagg
cctgccaaagattttcctctcgtcacgctcaacgaagacaggaatattcttgaggaggct
cagggatacgagcccaaaggaaccttcattcctgctgtccccaagcagacacaggatagt
ggggagtcggtggcagcagcccccgtctctgcagcagtagcagctgtgtccttacagcct
gaacctgctgctgctgctacagcagtggacaaagaggaggaggaggaggacattccagag
tactcacagtcacagaaagacgagagtctggatgagctggatgtggacctggacaacatg
gagctggatgacatcgacaccacagacgttaacctcgatgatgactttctagacgactga
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integrated database retrieval system
