Etheostoma cragini (Arkansas darter): 117954509
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Entry
117954509 CDS
T07493
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117954509 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117954509 (chd8)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117954509 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
Chromo_MIT1
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
117954509
NCBI-ProteinID:
XP_034744261
LinkDB
All DBs
Position
12:6716923..6737690
Genome browser
AA seq
2562 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDALPDDSFSQGSSDPVEEALKLALGQVDPPTEPELMVNAGLGV
SVAAPAIPDPAPVQVPTQQPVQVATDQTVTIAAARTVATVPAPTPVNTVPQIQNTLPIVS
STSVVTSSTVLLSSPLTVSSSPITTTATTQQLTQITHQFTPQQLAAITQQAGGKIVILKG
PQGQAQVLQTVSGAQGQTSGKVIRVLSGTPLKPGMSILQGGTVLNQASPGQTQVKVGATG
VQRLMQSPNGPVKQMVLTSMPQQTQGQTVQVQIPAQTQMAQGQAQATQIQVQTQGQVQLQ
PAMQAQTQGGEAKRITLVLQQPSQAGSAATAGQAQQQLTQVQQVQTAQGGQQHQIPARLV
LGQLPGGKLVLQGSQLAALTQARAAGQAGGQPKVLTIQLQVQQQPNQQGGIKYQLVSGAG
AGSPQVLQISQGQGGQRVAVPLKMLLQPQTSSASSAGGTVSVVKVINTSAAGPSTTTTTS
SQAIRITKAPGEPASVRRVEILCKQEKANRIVAEAIARAKARGEKNLPRVLNQDELPATQ
TSPEVGGTVTVVSATKKKTSGGGNKKKSPVAGGTTTKSTGGQCKSKGKTPGGTTGVTGGT
VIPGTGNKSKSKTKTNTITLVGAKKRKRNASSDHSDGELSPASPTALDDDLITKRRSNRV
VKRKKYTEDLDIKITDDEDEQEDVDVTTTAAAVASISGGSAAQLKQELELDVEGQPSMQF
FVENPSEEDAAIVDKVLSLRLTKKEVCPGQYTTVEEFFVKYKNYSYLHCEWASLAQLEKD
KRIHQKIKRFKTKHAQMRHLFQEDEEAFNPDYLEADRILDVSHSVDKDNGEPVIYYLVKW
CSLPYEDATWELKEDVDEGKVEEFKKIQNRQPRLKRTPRPSASSWKKLEETREYKNGNIL
REYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLAEEYDAGVQGPFLVIAPLSTI
TNWEREFSTWTDMNAIVYHGSLASRQMIQQYEMYCKDDKEHLIPGAYKFDALITTFEMVL
SDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLL
HFLEPAQFPSETEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEV
ELTDIQKKYYRAILERNFSFLSLGANSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVA
ELREVYDPMAPDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLI
NKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSD
WNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKE
SNANGQIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGK
GSTFSKASFVASENRNDIALDDPEFWQKWAKKADIDMDSMNRKNTLVIDTPRVRKQTRQY
STLRGEGGDLSDLDSDDEYPPANSRQSRASRRSDRHSGGGYGRTDCFRVEKHLLVYGWGR
WKDILSHARCKRRLSDRDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREPQTL
LNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTLLLDDSYRKHLKHQCNKVLL
RVRMLYYLKQEVIGEHADAVLKGADSRDVDIWMPEMEQQEVPALWWDTEADRSLLAGVFK
HGYEMYTTMRADPCLCFLERAGRPDDKAIDAEQHTGDGELGDDADYDKYSEDPEFKPLSR
HAKDLFEEPDSMNVDDEISVEDKVGPVISESLSSQSGACDWPSSSSLTARLRRLITAYQR
SYRQEQLKMEAEAKGDRRRRRCEQASKLKEIARQERQQRWTRREECDFYRVVSTFGVEKI
KKELGLPEGGDPDFDWNRFRTFARLDKKTDESLSRYFRSFVAMCRRVCHLRPGRGEDLSE
LSQTVAPITEERASRTLYRISLLRRLRERVLPHPSLEERLPLAPTSSELPAWWNIPEHDR
QLMLGAALHGVSRTELSIFPDPQFTFTQAREQFIQNQQAPPPPPQAPPIMPLSQPKAEED
MPIVKEEGAKEDTRLLGGEISVALQNTPLSQHEGKARGPGWSLKRSRGRVGKTGGRKGEG
GSDSDSDSDSGSSSSGRSGSSDESAESEEEVERAGMKLCDVDEENSLLSMTQSQDGILPP
DPLRVDWPKDRVLINRLDSLCTLTLTGQWPSGRRYMPEAPLNTSSELAGDEMAYTRVIRK
PSSTPGGPGEDGEDGEFTVKLLKEEGLKLTFSKHALMPNGSGGESSGRKRRKDQELSDPD
GLNDPLERTPRRRDPPTWLKENPDYEVEGDMLELLVNRSKRKRRRRADKALTGSEKVKVI
NMRTGKKVGAAFCPMLQDLREYLEENPDNAVAPDWSETVRNSGFLPETLIHRLLTEHSEI
PKKSRRRHHHHHHHHHHTPEPTSEVGLDGVEEETLVSDGAYMMDEEDLETSHHFLTSPDF
DVKMEGGDSLSQGDYDSSDQEALLDDVIIAQKDSDSSSSSED
NT seq
7689 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgaggacacacccctgtttaaccttgatgcccta
cctgatgactccttctctcagggctcctcagaccctgtggaggaggcacttaagctggcg
ttgggtcaggtggacccacccacggaacctgagctcatggtcaatgcaggccttggtgtt
tctgtagcagctcctgccattccggaccctgcccctgttcaagtccccacacagcagcca
gtgcaagtggcgactgaccagactgttaccatagctgcagctcgcactgtagccacagtc
cctgctcctaccccggttaatactgtacctcagatccagaacaccttaccaattgtcagc
agcaccagcgtggtcaccagtagcactgtcctgctgagttcccctttgactgtttccagc
tccccaatcaccaccactgccaccacgcagcagctcacacagataactcatcagttcact
ccacagcagttagctgccatcacacagcaggccggtggtaaaattgtcattctcaaaggt
ccccagggtcaagcccaggtgctgcagactgtatcaggagcccaaggccagaccagtgga
aaggtaatccgtgtgttgtctggaactcctcttaaacctggcatgtccatactgcagggg
gggacagtcttgaatcaggcgagcccgggacaaactcaagtcaaagtgggtgcaacaggg
gtgcagaggctgatgcagtctcccaatgggccagtgaaacaaatggtgctgacctccatg
ccccagcagacgcaaggccagacagttcaggtgcagatccctgcccaaacacagatggct
caaggccaggcccaagctacccagatccaagtccagacccaaggccaggtacagctccag
ccagccatgcaggcccaaacacagggtggtgaagcaaagcggatcacactggttctccag
cagccctcccaggctggctctgctgcaacagcgggtcaagctcagcagcagctcacacaa
gtccaacaagttcagacagcccaagggggccagcagcatcagatcccagctcgattagtg
ctggggcagctccccggaggcaaactggtgctccagggcagccagctagcagcattgacc
caggctcgggctgcaggccaggctggagggcagcctaaagtcctcacaattcagctgcag
gtgcagcagcagcccaaccaacaaggaggaattaagtaccagctggtctcaggagctggc
gctggcagcccacaggtgttgcagatctcgcagggccaaggaggacagagagttgcagtg
ccactaaaaatgcttctgcagccacagacaagctcggcatcctcggctggcggcacagta
tctgtggtaaaggtcatcaacacgtcggctgcaggcccctccactacaaccaccacttcg
tcccaggccatccgcatcaccaaggcccctggcgagcctgcctctgtgcgacgggtagag
atactctgcaagcaggagaaagcaaaccgtattgtggctgaagccatagcccgggccaaa
gcacgtggggagaagaaccttcccagagtcctcaaccaggatgagcttccagccacacag
acctccccagaagtggggggcactgtgactgtggtgtctgctactaagaaaaagaccagc
ggaggaggaaacaagaagaaaagtcctgtagctggaggaacaacgaccaaaagcacaggg
gggcagtgcaagagcaaagggaagacaccaggaggaacaactggagtaactggaggcacc
gtaatacctgggactgggaacaagagtaaaagcaagactaagacaaacactattactctg
gtgggagcaaagaaaagaaagagaaatgcgtcctcagaccactctgatggggagctgagc
cctgcctcacctactgctctggatgatgacttgattacgaagaggcgctccaatcgtgtg
gtgaagaggaagaaatacactgaggacctggatatcaagataacggatgatgaagatgag
caggaagatgtagatgttactacaactgcggcagctgtggcctccatcagtggcgggagt
gcagcgcagcttaaacaggagctggaactggatgttgaaggacagcccagcatgcagttc
tttgtggaaaacccaagtgaggaagatgctgccattgtagacaaagttctgtctttgagg
ttaaccaaaaaggaggtgtgtccgggccagtacaccactgttgaagaattctttgtaaaa
tacaagaactattcctacttacattgtgagtgggccagtttggctcagctggagaaagat
aagaggatccatcaaaagatcaagaggtttaagaccaagcacgcacagatgaggcacctc
ttccaggaggatgaggaggcttttaacccagactatttagaggcagacaggatcctggac
gtttcccacagtgtggacaaggacaatggcgagcctgttatctactacttggttaagtgg
tgctctctgccttatgaagacgctacttgggaactgaaggaggacgtggatgagggaaaa
gtcgaagaattcaagaaaatccaaaaccgacaacctcgcctaaaaagaaccccacggccg
tctgccagttcatggaagaagttggaggagaccagagaatacaaaaatggcaacatactt
cgagagtaccaacttgaaggtgtcaactggctgctcttcaactggtacaacaggcagaac
tgtattctggcagatgagatgggtctggggaagaccatccagtctatcgcactgctggct
gaagagtatgatgctggcgtccaaggccctttccttgtcatcgctcccctctccaccatc
accaattgggagagggagttcagcacgtggaccgacatgaatgctatcgtctaccatggt
agcctggccagccgacagatgattcagcagtatgagatgtactgcaaggatgacaaggag
cacttaattccaggtgcatacaagtttgacgccctcattacaacatttgagatggtgtta
tctgactgcccagagctgagggagatctcctggcgttgtgtaatcattgatgaggctcac
cgcctcaagaatcgcaactgcaaactgttggacagcttgaagatgctggatctggaacac
aaagtgttgttgaccggcactcctctccagaacactgtggaggaactcttcagtctgctt
catttcctggagcctgctcagttcccttctgagactgaattcctcagagactttggagac
ctcaaaacagaggaacaggttcagaagctgcaggccatcttaaaacccatgatgttacga
aggctcaaagaggatgttgagaaaaacttggcacccaaacaggagaccatcattgaggtt
gagttaacggatatccagaagaagtactaccgggctatcctggagcggaacttcagtttt
ctcagtttaggtgcaaacagtaacagcaatgttcccaacctactcaacacaatgatggag
ctacgcaagtgttgcaaccacccctacctcatcaatggcgcagaggagaagatcgtagct
gagctgcgggaggtgtacgaccccatggcgcccgacttccatttgcaggcccttattcgc
tcagccggcaagctggtgctactagacaagctgctgcctcgccttaaggctggtggccac
aaagtgctcatcttctcccagatggtgcgttgcttagacattctggaggactacctcatc
aacaagagatacctttatgagcgaattgatggccgagtgcgtggaaacttacgacaagct
gctatcgatcgcttcagcaagcctgactcggaccgctttgtcttcctgctgtgtacccgt
gctggcggcctgggtattaaccttactgctgctgacacctgtgttatatttgactctgac
tggaaccctcaaaatgacctgcaggctcaagcacggtgtcatcgtattggccagtctaag
gcggtcaaggtctaccgtctgatcactaggaactcctacgagagggagatgctggataaa
gcaagtctgaagcttggcttggaccgtgccgtcctgcagagcatgagtggcaacaaagaa
agtaacgccaacgggcagatccagcaattctccaagaaggagattgaggacctgctaagg
aagggagcctatgctgccatcatggatgagaatgatgaaggcagtcgcttctgcgaggag
gacattgaccagatccttcagcgtagagccaccaccatcaccatcgagagcgagggcaag
ggctccactttctccaaggccagctttgtggcctctgagaaccgcaatgacattgccctt
gatgacccagaattctggcagaagtgggccaagaaagccgacatagacatggactccatg
aaccggaagaacaccctcgtgattgacactcccagagttcgcaaacagacccgccagtac
tccactttacgaggtgaaggtggagacctctctgatctggatagcgacgatgaatatcca
cctgcaaattccagacagtcgcgtgcctcacgtcgctccgaccgccacagtggagggggt
tacggccgcactgactgtttcagagtggagaaacacctgcttgtctatggttggggtcgc
tggaaggatatcttatcccatgccagatgtaagcgtcggctgagtgatcgtgacgtggag
acaatctgccgtgtcatcctggtcttttgtctgctccattatcgtggggatgagaacatc
aagagtttcatctgggagctcatcacaccgccagagaacgggcgtgaaccccaaacacta
ctcaaccactctggcctgtctatacctgttcccagaggccggaaaggaaagagggtaaaa
gcccagagcacatttgatgttcagaaggtggagtggatccgcaagtacaaccctgacacc
ttgcttctggatgacagctaccgcaaacacctcaagcaccagtgcaacaaggtgttgctg
agggtgcgcatgctctactacctgaaacaggaggtgattggcgagcatgccgacgctgtc
ctgaaaggggctgacagcagggatgttgatatctggatgccagagatggagcagcaggag
gtccctgcactatggtgggatactgaggcagatcgctcactgcttgctggcgtattcaaa
catggttatgagatgtacacgacaatgcgggctgatccatgcctctgcttcctggagaga
gctggtcggcctgacgataaggccattgatgctgagcagcacactggtgatggcgagctt
ggagacgatgctgactacgataagtactcggaggacccagagttcaagcctttgtcaaga
cacgccaaagaccttttcgaggagcctgactccatgaacgtggacgatgagatttctgtg
gaagacaaggtggggccagtgatctccgaaagcttgtccagccagagtggtgcatgtgac
tggccctccagctcatcactgacagcacggttgcggcggctgatcacagcttaccaacgt
agctacaggcaggagcagctgaagatggaagccgaggcaaagggcgaccgcaggcgcagg
cgttgcgaacaagccagcaagctgaaggagattgcacggcaggagcgccagcagaggtgg
acacgtagggaagaatgtgacttctaccgggtggtatcaacgtttggtgtggaaaagata
aaaaaggaactaggtcttccggagggaggagatcctgattttgattggaaccgcttccgt
acctttgctcgtctggataaaaaaactgatgagagcctcagccgatacttccgctctttt
gttgccatgtgccggagagtttgccacctgcggccaggccgtggtgaagatttatcagag
ctttcccagactgtggcccccatcactgaggagcgtgcttcgcgtaccctttatcgcatt
agcctcctgcgtcgcctccgtgagagagtcctaccccacccatccctggaggagcgtctg
cctctggcgccgaccagctccgagctgcccgcttggtggaatataccagaacatgatcgt
cagctgatgctgggcgccgcactgcacggtgtcagccgcactgagctctccatattccca
gacccacagttcactttcactcaggctcgggaacagttcatccagaaccagcaggcccca
ccacctccacctcaggcaccgcccatcatgcccctcagccagccaaaggctgaggaggac
atgcccattgtaaaggaggagggggctaaagaggacacccggttgcttggaggtgaaatc
agtgttgccctgcagaacacacccttaagtcaacatgaaggcaaggcacgggggccaggc
tggagcctcaagaggagcagggggagggttggaaaaacaggaggaaggaagggtgaggga
gggtcggattcagattcggattcggattcaggttcatcatcatccgggcgatcgggcagc
agtgatgaaagtgcagagagtgaggaagaggtggaaagagcaggcatgaagctgtgtgat
gtggatgaagagaatagtttactctccatgactcaatctcaggatggcattcttcctccc
gatcctctcagagtggattggcccaaggaccgtgtgttgatcaaccgtctggacagtttg
tgtacgctgacgctgactggtcagtggccctcagggcggcgctacatgcccgaggcgcca
ctcaacacaagctcagagctggcgggtgacgagatggcctacacaagggtaatccgtaaa
cccagcagcacgcctggtggccctggggaagatggagaagatggagagttcactgtcaag
ctccttaaggaggaggggctgaagctgaccttctctaagcatgccctgatgcccaatggc
tcagggggagagagcagtggtcgtaaaaggcgcaaggaccaagagttatcagacccagat
ggactcaatgatccactggagcgtactcctcggcgcagggaccctcccacctggttgaag
gagaacccagattatgaggtggagggagacatgctggagcttcttgtgaaccggagcaag
aggaagagaaggaggagggcagataaagccctgactggcagtgagaaggtcaaagtcatt
aacatgaggacaggaaagaaggtcggagctgctttctgtccaatgctgcaagatctgagg
gaatatctggaggagaatcctgataatgctgtagcaccagactggtctgaaaccgttcga
aactcgggcttcctgcctgagaccctcatccaccgactgctgactgagcactcggagatc
ccgaagaaaagcagacgccgccatcaccaccatcatcaccaccaccaccacactccagag
cccacctctgaggtgggcttggatggagttgaagaggagactctggtctcagatggagcc
tacatgatggatgaggaggacctggagacctcccatcatttcctcaccagtccagacttt
gacgttaaaatggagggcggtgacagcctttcccaaggtgactacgatagctcggatcaa
gaggcgctattggacgatgttatcatagcacagaaggactctgactcctcatcaagctca
gaggattga
DBGET
integrated database retrieval system
