Etheostoma cragini (Arkansas darter): 117954621
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Entry
117954621 CDS
T07493
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117954621 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecra01002
]
117954621 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117954621 (shhb)
Peptidases and inhibitors [BR:
ecra01002
]
Cysteine peptidases
Family C46: hedgehog family
117954621 (shhb)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Morphogens
117954621 (shhb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Hom_end_hint
Vint
DHQS
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
117954621
NCBI-ProteinID:
XP_034744463
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Position
12:complement(3003841..3008541)
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AA seq
417 aa
AA seq
DB search
MPDMVLMRGTLSVALCLLLASVGSGCGPGRGHGKRRHPKTLTPLALKQFIPNVAEKTLGA
SGKYEGKISRNSDRFKDLAPSYNPNIIFKDEENTDADRLMTQRCRDKLNSLAISVVNQWP
GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYESK
AHIHCSVKAENSVAAKSGGCFPGSSIVILSDGRTKPLKELQVGDKVLAADQQGNLVPSDF
LMFMDQDRQIMRDFHVLETEEPRCRLTLTAAHLVFVVSNNNNSTNSRNIRAMFSSNVKVG
QWLLVVGKDSTDHLIPARVTRIHVEKYRGSYAPVTSHGTIIVDWVLASCYAVVEDHDLAH
WVFVPVRLWRSFLSLVGMVKELSSVYQTEGVHWYPELLYHVGSWVLDSSSFYPQTGL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgccagacatggtcctgatgagagggacgctgtcagtggccctctgcctgctgctggcg
tccgtgggctcgggctgcggaccaggcaggggacacgggaagcggaggcaccccaagacg
ctgactccgcttgcactgaaacaattcatccccaacgtggcagagaaaaccctgggggcc
agcggcaagtacgaaggcaagatcagccgcaactcggacaggttcaaggacctggctccc
agctacaaccccaatattatttttaaggatgaggaaaacaccgacgccgaccggctcatg
acacaaaggtgtagggacaaactgaactctttggctatttcagtcgtgaatcagtggccc
ggggttaaacttcgagtcacagagggctgggatgaggatggtcatcattcggaggagtct
ctgcactatgagggcagagcggtggacatcaccacctcagaccgggacaagagcaagtat
ggcatgctgtccaggctggctgtggaggcgggcttcgactgggtctactacgagtccaaa
gcccacatccactgctctgtaaaagcagaaaactcggtggcagctaagtctggaggttgc
ttccctggttcgtccatcgtgatcttgtcagatggaaggactaaaccattgaaggagctc
caggtgggggacaaggtgctggctgcagaccaacaaggaaatcttgttcctagtgacttt
cttatgttcatggaccaggacaggcagattatgagagatttccacgtcctggagactgaa
gagccacgctgcagactcacactgacggcagctcacctggtctttgttgtgagcaacaac
aacaacagcaccaacagccgcaacattagggccatgttctccagtaatgtcaaagtagga
cagtggcttcttgttgttgggaaagacagtacagaccatctcatccctgcaagagtgaca
agaattcatgtggagaaatatcgagggtcttatgcacccgtaacatctcacggaaccatc
atagttgactgggttttggcatcttgctatgcggtagttgaggaccatgaccttgcacac
tgggtttttgtgccagtccgactgtggcgctcattcttgtccctggtcgggatggtgaaa
gaactcagcagtgtgtaccaaacagagggtgtccactggtacccagagctcctctaccat
gtgggaagctgggttctggacagcagctctttttacccacaaacagggctttaa
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