KEGG   Etheostoma cragini (Arkansas darter): 117954748
Entry
117954748         CDS       T07493                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117954748 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecra03019]
    117954748 (ndc1)
Messenger RNA biogenesis [BR:ecra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117954748 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup TPP_enzyme_C
Other DBs
NCBI-GeneID: 117954748
NCBI-ProteinID: XP_034744609
LinkDB
Position
12:complement(10737586..10770753)
AA seq 670 aa
MFSAEQSCWFVRKVIFWRAVASIAWAVLLLPPITAVFVIISRFSLLHPIQAVSECLSFLT
SASAIFSFILLCGVIIMVGFLNLEYYTVIPRIACSKIALFGQLLHPRQFVNSLAHCIMGI
IVAWCCAITIGGRYETIAYPCTQGDGSPQMCLNEYHLILLLAGAFVGFSHSLLGVIYNMN
YVSFYTVQQYKYLRFKGSLSLVVKCSATQALYSVRNYIVVYYFLGYIPKAWICKTLNLDL
NSSVHPLDSIAGLLDLSLLYHLWIGGSFLLFTWHITLLLFRIFVTEVYSFPVQSSFTEDA
HQCLPKVLTDKQPKILQFLALQDLALLSQHSPSRRSEVFSLSQPGGHAHSWNAISKECLS
LLADLTQRLIAYHDTVATNGRAKSLSTGSERKTSSESSVTSGTEDLMSPRPTLMMKTPSS
VFARSIVGCPQSPLTAPFTPDLESPFASPALRRLTAPMDQCSPWFGTVQSPHIMRRAPKL
WSTSTDSQVNGSPLAFPASPVPSPKQEPSKPSLLAQFLQNRKEQVKNVLAKRVLIMYLFN
KLPEASSQALFADSQAHIWALEGLSYLVQSSFSEDQFGVVQTALPSILSCMLGLQEAVDR
HFKLPHASSKPVRSASSMGDSTHKTLRFALRATLKTSIYRITTTFGNHLNAVQMSAEHRK
RLQQFLEYKE
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgttttctgcagagcaaagttgttggttcgtccgcaaggtgatattctggagagctgtg
gccagtattgcttgggctgtcctgttgttgccacccatcacagccgtttttgtgatcatc
agcaggttcagtctgctccaccccatccaggcggtatcagaatgcctgtccttcttaacg
agtgcaagtgccatcttctccttcattctgctgtgtggggtgatcatcatggtagggttc
ctgaacctggagtattatacagtcatcccaaggattgcatgctcaaaaattgccctgttt
gggcagctgctccaccctcgtcagtttgtcaactcactggcccactgcatcatgggaata
atcgtggcttggtgttgtgccatcaccatcgggggcagatatgagacaatcgcctaccct
tgcacacagggtgatggttccccccagatgtgcctgaatgagtatcacctcatccttctg
ctggctggagcctttgttggattctctcacagtctgctgggtgtgatctacaacatgaac
tatgtttctttttacactgttcagcaatacaaatacctgcgctttaagggatccctatct
ttggtggtgaagtgtagcgccactcaagcactttactcagtcaggaactacattgttgtg
tattactttttgggatacattccaaaagcatggatttgtaagacattgaatcttgatttg
aacagctctgtccacccccttgacagcatagctgggctgctggacctgtccctgctctac
cacctgtggatcggtggcagcttcctcctcttcacatggcacatcacactgctgctcttt
aggatctttgtcactgaggtgtacagttttcctgtgcagtcatcgtttaccgaggatgcc
caccagtgtcttcctaaagttctgacggacaagcagccaaagatattacagtttctagcg
ctgcaggacttggctttgttgtctcaacactccccgtcaagacgcagtgaggtcttcagt
ctaagtcagccaggtggccatgcccacagctggaatgccatcagtaaggagtgtctgtct
ttgctggctgatctcactcagagactcatagcctatcatgacactgttgcaaccaatggg
agagccaaatcactgtctactgggagtgagaggaagacttcatctgagtcatcggttacc
tcgggtacagaagatctaatgagcccgaggcctactttaatgatgaaaactccgtcttcg
gtctttgcacgctccattgttggctgcccacagagccctctgacggctccattcactcct
gacctggagagcccctttgcttctcccgccttgcggcgtcttactgctcctatggaccag
tgctcgccgtggttcggcacagtgcagagcccacacatcatgaggagagccccaaagctc
tggtccacctccacagattcacaggtcaatggcagtccgctggctttccctgcctcccct
gttcccagtcccaagcaggaaccgtccaaaccaagtctactggctcagttcctccagaac
agaaaagaacaggttaaaaatgtcttggcaaagcgcgtgctgataatgtatttgtttaac
aagcttccagaggcctccagtcaagctctgttcgcagacagccaggctcacatctgggct
ttagaagggctgtcttaccttgttcaatcctccttctctgaagaccagtttggggttgta
cagacggcattacccagcatactcagttgcatgttgggcttacaagaggcagtagatcgc
cacttcaagctgcctcacgcctccagtaagccagtcaggtcagccagcagcatgggagac
tctactcacaaaacactgcgctttgctctcagggccactctcaagacttccatctacagg
ataacgactacttttggaaatcacttaaatgctgttcagatgtctgcagagcaccgaaaa
agattgcagcagtttctggagtacaaggaataa

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