Etheostoma cragini (Arkansas darter): 117954748
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Entry
117954748 CDS
T07493
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117954748 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117954748 (ndc1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117954748 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
TPP_enzyme_C
Motif
Other DBs
NCBI-GeneID:
117954748
NCBI-ProteinID:
XP_034744609
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Position
12:complement(10737586..10770753)
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AA seq
670 aa
AA seq
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MFSAEQSCWFVRKVIFWRAVASIAWAVLLLPPITAVFVIISRFSLLHPIQAVSECLSFLT
SASAIFSFILLCGVIIMVGFLNLEYYTVIPRIACSKIALFGQLLHPRQFVNSLAHCIMGI
IVAWCCAITIGGRYETIAYPCTQGDGSPQMCLNEYHLILLLAGAFVGFSHSLLGVIYNMN
YVSFYTVQQYKYLRFKGSLSLVVKCSATQALYSVRNYIVVYYFLGYIPKAWICKTLNLDL
NSSVHPLDSIAGLLDLSLLYHLWIGGSFLLFTWHITLLLFRIFVTEVYSFPVQSSFTEDA
HQCLPKVLTDKQPKILQFLALQDLALLSQHSPSRRSEVFSLSQPGGHAHSWNAISKECLS
LLADLTQRLIAYHDTVATNGRAKSLSTGSERKTSSESSVTSGTEDLMSPRPTLMMKTPSS
VFARSIVGCPQSPLTAPFTPDLESPFASPALRRLTAPMDQCSPWFGTVQSPHIMRRAPKL
WSTSTDSQVNGSPLAFPASPVPSPKQEPSKPSLLAQFLQNRKEQVKNVLAKRVLIMYLFN
KLPEASSQALFADSQAHIWALEGLSYLVQSSFSEDQFGVVQTALPSILSCMLGLQEAVDR
HFKLPHASSKPVRSASSMGDSTHKTLRFALRATLKTSIYRITTTFGNHLNAVQMSAEHRK
RLQQFLEYKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgcagagcaaagttgttggttcgtccgcaaggtgatattctggagagctgtg
gccagtattgcttgggctgtcctgttgttgccacccatcacagccgtttttgtgatcatc
agcaggttcagtctgctccaccccatccaggcggtatcagaatgcctgtccttcttaacg
agtgcaagtgccatcttctccttcattctgctgtgtggggtgatcatcatggtagggttc
ctgaacctggagtattatacagtcatcccaaggattgcatgctcaaaaattgccctgttt
gggcagctgctccaccctcgtcagtttgtcaactcactggcccactgcatcatgggaata
atcgtggcttggtgttgtgccatcaccatcgggggcagatatgagacaatcgcctaccct
tgcacacagggtgatggttccccccagatgtgcctgaatgagtatcacctcatccttctg
ctggctggagcctttgttggattctctcacagtctgctgggtgtgatctacaacatgaac
tatgtttctttttacactgttcagcaatacaaatacctgcgctttaagggatccctatct
ttggtggtgaagtgtagcgccactcaagcactttactcagtcaggaactacattgttgtg
tattactttttgggatacattccaaaagcatggatttgtaagacattgaatcttgatttg
aacagctctgtccacccccttgacagcatagctgggctgctggacctgtccctgctctac
cacctgtggatcggtggcagcttcctcctcttcacatggcacatcacactgctgctcttt
aggatctttgtcactgaggtgtacagttttcctgtgcagtcatcgtttaccgaggatgcc
caccagtgtcttcctaaagttctgacggacaagcagccaaagatattacagtttctagcg
ctgcaggacttggctttgttgtctcaacactccccgtcaagacgcagtgaggtcttcagt
ctaagtcagccaggtggccatgcccacagctggaatgccatcagtaaggagtgtctgtct
ttgctggctgatctcactcagagactcatagcctatcatgacactgttgcaaccaatggg
agagccaaatcactgtctactgggagtgagaggaagacttcatctgagtcatcggttacc
tcgggtacagaagatctaatgagcccgaggcctactttaatgatgaaaactccgtcttcg
gtctttgcacgctccattgttggctgcccacagagccctctgacggctccattcactcct
gacctggagagcccctttgcttctcccgccttgcggcgtcttactgctcctatggaccag
tgctcgccgtggttcggcacagtgcagagcccacacatcatgaggagagccccaaagctc
tggtccacctccacagattcacaggtcaatggcagtccgctggctttccctgcctcccct
gttcccagtcccaagcaggaaccgtccaaaccaagtctactggctcagttcctccagaac
agaaaagaacaggttaaaaatgtcttggcaaagcgcgtgctgataatgtatttgtttaac
aagcttccagaggcctccagtcaagctctgttcgcagacagccaggctcacatctgggct
ttagaagggctgtcttaccttgttcaatcctccttctctgaagaccagtttggggttgta
cagacggcattacccagcatactcagttgcatgttgggcttacaagaggcagtagatcgc
cacttcaagctgcctcacgcctccagtaagccagtcaggtcagccagcagcatgggagac
tctactcacaaaacactgcgctttgctctcagggccactctcaagacttccatctacagg
ataacgactacttttggaaatcacttaaatgctgttcagatgtctgcagagcaccgaaaa
agattgcagcagtttctggagtacaaggaataa
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