Etheostoma cragini (Arkansas darter): 117955282
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Entry
117955282 CDS
T07493
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117955282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117955282
03009 Ribosome biogenesis [BR:
ecra03009
]
117955282
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117955282
Spliceosome [BR:
ecra03041
]
Complex A
U2 snRNP components
U2 related factors
117955282
Complex B
117955282
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117955282
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
90S particles
Helicases
117955282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
117955282
NCBI-ProteinID:
XP_034745576
LinkDB
All DBs
Position
2:complement(13949756..13958254)
Genome browser
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYASTKKRSEGRDRDRDKDREDRSRDRDRDRDRDRDRDLKPPSLPSNST
VPLTMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSTAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRPDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcctggatttgggtgatgattacgcatccactaagaagaggtct
gaggggagagacagggaccgggacaaagaccgcgaggaccgctccagggacagggaccga
gatcgggaccgagacagagacagagacctgaagccgcctagtctcccgtctaacagcacg
gtgcccctgaccatgccgtgtttggcgcccatcaagcagatggctatgcaacagcagatc
aacccattcaccaacctgccgcacacgccacgcttctacgagatcctaaagaagcggtta
cagcttccagtgtgggagtacaaggaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggtgaaactggctctggaaagacaacacagatcccacagtggtgtgtg
gacatggtgaggggcttgcctgggcctaagcgggcggtagcctgtactcagcctaggaga
gtggcagctatgagcgtggctcaaagagtagcagacgaaatggacgtcatgcttggacag
gaagtcggctactccattcgatttgaggactgcagcactgctaagactatactcaagtac
atgacagatggtatgttactaagagaggctatgaatgacccgctgttggagcgatatggt
gtgatcattctggacgaagctcacgagcgaactctagccacagatatcctgatgggagta
ctcaaggaggtggtgcgtcaaaggccggatctgaaggtcatcgtcatgagtgccacgctt
gatgctgggaagtttcaggtttactttgacagctgtcctctcttgactattcctggacgt
acacatcctgtcgagattttctacacccctgaaccagagcgagactaccttgaggcagcg
atccgcactgtcatccagattcacatgtgtgaggaagatgaaggtgactgccttctcttt
ctcactggtcaagaggaaattgatgaggcctgcaagcggatcaagcgtgaggtagatgac
cttggacctgaagtcggagacataaaaatcatcccactgtattctacgttgccaccacag
caacagcaaaggatctttgagccgcctcctccaaggaaaccaaatggtgcaataggaaga
aaggttgtggtttcgacaaacatcgctgagacctctctgacaattgatggtgtggtgttt
gtcatcgaccctggatttgccaagcaaaaggtttacaatccccgtatcagagtcgagtct
ttgctcgtcacggccatcagtaaagcttctgcccagcagagggcaggacgagccggcaga
acacgtccagggaaatgtttccgcctttacacagagaaggcctacaaaacagagatgcag
gataacacataccctgagattcttcgatccaacttgggatctgtggtgctgcagctgaag
aagctgggtattgatgaccttgtgcactttgacttcatggatccaccagctcctgagaca
ctgatgagggcccttgagctgctgaattacctggcagctctcaatgatgatggtgacctg
acggagctggggtccatgatggcagagtttcctttggaccctcagctggctaagatggtc
attgccagctgtgaatttaactgttctaacgagatcctctccattactgccatgctgtca
gtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtccaagatg
aggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggctaaccagtggtgctatgacaactttgtcaactaccgttcgctgatg
tctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctgccccgt
cggagcactgagttcaccagcagagattactacaccaacatccgccgagcactctgcacc
ggcttctttatgcaggtggctcatctggagcgtacagggcattacctcacagtcaaagac
aaccaagtggtccaactgcacccatctacagtcctggaccacaagcctgagtgggtgctc
tacaatgaatttgtcctcaccaccaaaaactacatccgcacgtgcacggacatcaaacca
gaatggctggtgaagattgcaccccagtactatgaaatggggaacttcccacaatgtgaa
gctaaacgacagctggagcgaatcattgccaaactagagagcaaggagtattcccaatac
tga
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