Etheostoma cragini (Arkansas darter): 117955590
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Entry
117955590 CDS
T07493
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03030
DNA replication
ecra03420
Nucleotide excision repair
ecra03430
Mismatch repair
ecra03440
Homologous recombination
ecra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117955590
03420 Nucleotide excision repair
117955590
03430 Mismatch repair
117955590
03440 Homologous recombination
117955590
03460 Fanconi anemia pathway
117955590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117955590
03032 DNA replication proteins [BR:
ecra03032
]
117955590
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117955590
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117955590
DNA replication proteins [BR:
ecra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117955590
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117955590
MMR (mismatch excision repair)
117955590
DSBR (double strand breaks repair)
HR (homologous recombination)
117955590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
117955590
NCBI-ProteinID:
XP_034746065
LinkDB
All DBs
Position
13:15305020..15342584
Genome browser
AA seq
681 aa
AA seq
DB search
MGEVLTQGAIEALLKGFPMSNPVLQLLNLRQVSNSSSPPRFRLLMSDGRHSYASFLLATQ
LNNLHEENLLVPNCVCMVKKTIINTLSDGRHVVVVMDMEILQSAEETGGKIGNPTPYNAV
DQMSSPQNLASSTSVPAAAVPGPSYKNSSTLSPPRGFTGKSPMKASPIASPMKASPVASP
IKASPMEVSPKMFSPMKGSPMASPMKFSPKTLSPMKASPMASPMKASPMKFSPKTFSPMK
ATSTSPGSSTTVIPIASLNPYQSKWTVRARVTNKSSIRTWSNSRGEGKLFSFEIVDESGE
IRITAFNDEVDKFFSLVEQGKVYYITKATLKVAKKQFSTLKNDYEMTLHANSSITPCDDN
QGIPAVHYDFVPIAELENRDKDAIIDVIGVCTSAEDVSRITTKNSREVSKRALNLIDTTS
KVVTVTLWGEEAEKFDGSLEPVVAIKGARLSDFGGISLSALFGSTVMVNPDIPEAFSLRA
WYDYGGYALDSQSLTETRSVGSGAKTNWKTLSDIKNEQLGQAEKTDYFSCVATVLYTRKE
NCLYQACPSADCNKKVIDQQNGLYRCDKCNREFPNFKYRLILSANLADFGDNQWVTCFQE
TAEVLFGHSTETLGQLRDTDEAAFNEVFQKTNFTTHIFTNKVKLETYNDECRLKVTVMEV
QPVDHREYSRRLLSNIRKLAR
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgctcacacagggggcaattgaagccctgttaaaaggatttccgatgagc
aaccctgtgctgcagcttctgaacctccgtcaggtcagtaacagctctagtccacccagg
ttccggctcttaatgagtgatggtcggcactcttatgcttccttcctgctggccacacag
ttaaacaatctacatgaagagaacctcctggtacctaactgtgtgtgtatggtgaagaag
acaatcatcaacacattgtcagatggcaggcatgtggtggttgtgatggacatggagata
ttgcagtcggccgaggaaactggagggaagattggaaatcccacgccttataatgcagtt
gaccagatgtcatctccacagaatttggcctcaagtacctccgtcccggctgctgcagta
cctggaccctcctataagaacagcagcaccctttctcctcccagaggttttacgggaaag
tcacccatgaaggcttcaccaatagcttcacccatgaaggcttcaccagtagcttcaccc
attaaggcttcacccatggaggtttccccaaagatgttttcacctatgaagggttcacca
atggcttcacccatgaagttttccccaaagacgctttcacccatgaaggcttcaccaatg
gcttcacccatgaaggcttcacccatgaagttttccccaaagacgttttcacccatgaag
gctaccagcacttctcctggttcttcaacaacagtgattcctatagcaagcctcaacccc
taccaaagcaaatggactgtcagagcccgagtcaccaacaagtccagtatccgcacctgg
agtaactctagaggagagggcaagcttttctccttcgagatagtagatgagagtggagaa
atcaggattacagccttcaacgacgaagtggacaagtttttctctctagtggagcaaggc
aaggtgtactacataaccaaggctacgctgaaagtggccaagaaacagttcagcacactg
aagaacgactatgagatgaccctccacgctaattcatccatcacaccatgtgatgacaat
cagggcatccctgcagtgcactatgactttgtgcccatcgcagagctggagaaccgagac
aaggacgccattattgatgtgattggagtgtgtacgagtgctgaggatgtatcccgtatc
accactaagaacagcagagaagtttccaagagggccctcaacctaatagacacaactagc
aaagtagtgacagtcacactttggggagaggaggctgagaagtttgatggttctctggag
cctgtggtcgccatcaaaggagctcgcttatctgattttgggggcatatctctctccgct
ttgttcggttcaacagtcatggtcaacccagacataccggaggcctttagtctgcgggcc
tggtatgactacggaggatatgcactcgacagccaatccctgacagagacgaggtcagtg
gggagcggagcaaagacgaactggaaaacactgagcgacattaagaatgaacagttgggt
caagcagagaagacggactatttcagctgcgtggcaacagtgctatacactcgtaaggag
aattgtctataccaggcctgtccatctgcagactgcaacaagaaggtcattgaccaacaa
aacggactgtaccgctgcgataagtgtaaccgagagttccctaactttaaatacagactc
atactttctgccaacttagcagacttcggggataaccagtgggtgacatgctttcaggag
acagctgaggtcctgtttggtcacagtacagaaacactgggacagctcagagacacagac
gaggctgcattcaatgaagtttttcagaaaaccaacttcacaactcacatctttacaaac
aaagtcaagctggagacttacaacgatgagtgtcgattaaaggtaacggtaatggaagtc
cagccagtcgaccacagggagtacagcaggagactccttagtaacatccgtaaattggcc
agatga
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