Etheostoma cragini (Arkansas darter): 117955844
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Entry
117955844 CDS
T07493
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117955844 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117955844 (nfrkb)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
117955844 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
117955844
NCBI-ProteinID:
XP_034746478
LinkDB
All DBs
Position
13:12380734..12409289
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AA seq
1276 aa
AA seq
DB search
MDALTHMLTDPLDPKEENDGQITEECMLGNCRLNLPEDLLEDPEIFFSVMSESTWSEVLS
DSQRQHLRQFLPQFPDNNVAEQDSTISDLFNNKDFNFGNPLYLAQKQFRDGYFNPEVVKY
RQLCAKSQRKRQLYSLQQYYHKLLKHILVSRKELLEFAVHSGLDFPPKRKLQTKTHVEMR
EPRVRRRLSRILKDVKTECGDSNASSDDDDISSWTPAPQSPPSPTPTVSLRVLPSLSTQD
MKITEKIELGEQDLKAMLQNHREKRKRQPDHPDLMTSDLQLGDILSRANIGRKGTVPLFD
LSLPKKKIKDERRKKKMRTIKVESEDPCEILAPSDTPSAPPTSIINSLPDTPSTPLPNIK
EEIVEESQSSPVPVEEIAISFFSLLESILRAENLNSTSLLEEKVQMWQSSPASCLNVWFS
YVPCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFADESQQWRWIGPTQDTEKDLSAL
CQLWLDSKDLVIKTENEDMLEMTSPTARVSTDYVVRPSTGDERQVFQIQEQQRYNQPHKA
FTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGEG
TRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRSRS
QEEFERIHQAQAAAAKARKALQQKPKPASKPKSGSKDGSSKTTGCLEAGQDIGSNPMSPT
PTTPTPNTPGTPMSPLPCTTTTPTKTGVPDTIKTSTGVLIVSPPSLPQLGTILPTSQACP
PVSQPVTSQHAARIVSHLAAGSLPQVRVVSTQPGLGSSVGGQQATLVHQTPHQIRMPVSM
SAKGISQAVVSVPLRSQSASSPVQVPTTLSVSAVAVAKPQARSPGSPAKNPVSPAMLQGV
TSPNIKQVSITGQLGMKTGGAGIPITATNLRIQGKDVLRLSPSSITTDAKGQTVLRITPD
MMATLAKSPVATVKLTPDFLSSATTGSKSISATLHVTPPHPSPSSASSATSCTGEVQTTK
AGSVTANLLKAAGDTAIRLMPTLAVTMADQKSRTFSSVTSPDKSGATIRIMPGLGVIPQK
QGQTITMTTTTGCKTLTASTCANVVTMAASVVAGAKGITVAPGVSCSPLTLGTATATVRQ
VPATVVTTQTGKLPARITVPISVLNQPLKSKSVVTTPIVKGSLNTNSISSLGRNIILTTM
PAGTKLIAGNKPVSFVTAQQFQQLQQQGQATQVRIQTVQAQQLQQHMATGSPKSVSTVVV
TTAPSPKCAPDPPPAP
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggatgccctcacccacatgctaacagaccctctcgatccaaaagaagaaaacgatgga
caaatcacagaggaatgcatgctcgggaactgtagattgaaccttccagaggacctactt
gaggaccctgaaatattcttctctgtgatgagtgaaagcacctggagtgaagtgctgtca
gattcccagaggcagcaccttcggcagtttttgccacagtttcctgacaacaatgttgct
gagcaggacagcaccatcagcgacctgttcaacaacaaagactttaactttggaaatccc
ctttatctcgcacaaaaacaattcagagatggttacttcaatcctgaggtggtcaagtac
agacaattgtgtgccaagtcccaaaggaagcgacagttgtactcccttcagcaatattac
cacaaactgttgaagcacatcctcgtctccagaaaggagctgctggagtttgcggttcac
agtggtctggactttccaccaaaaagaaagttacagaccaagactcatgttgaaatgcgg
gagccaagggtgagaagacgattgagccgcatcttaaaggacgtcaaaactgagtgtgga
gacagtaatgcttcatctgatgatgacgacatatcatcatggactccagcaccccaatca
cccccctcgcctacacccactgtctcgctcagagttcttcccagcctctccactcaagac
atgaagattactgaaaaaatagaactaggggagcaggacttgaaagccatgctccagaac
catcgggagaagaggaagcgacagccggatcatccagacttgatgacctccgatcttcag
cttggagacatactttcaagagcaaatattggtcggaaggggactgtgccactttttgat
ctgtctctgcctaagaagaagataaaggatgagagaaggaagaagaaaatgaggacaata
aaagtggaatctgaggatccctgtgaaattctcgcaccttcagacaccccatcagctcca
ccaacgagcatcatcaactccctgccagacacaccatctactccactgcccaacattaag
gaggaaattgtggaagagtctcagagcagcccagttccagttgaagaaatagctatcagt
ttcttcagcttgttggagagcatcttaagggcggaaaaccttaacagcacttcactgtta
gaggagaaagttcaaatgtggcagtcttctccagccagttgtctcaacgtgtggttttca
tatgtcccatgttggtccgacttggttcttcaagccttgcagtttcttgcgggagagact
aaagatgggatgatggcactccccagtggcttttctccatttgtggaatttgctgatgaa
tctcagcagtggaggtggattggccccactcaggatacagagaaggatctcagtgctctc
tgtcagctgtggctggactccaaagatttagttatcaagacagaaaatgaagacatgcta
gagatgacgtctcccacagcgagagtctcaactgattatgtggtgcggcccagtactgga
gatgagagacaagtgtttcaaatccaggagcagcagcgatacaaccagccacataaagcc
ttcacctttaggatgcacggctttgaatctgtggtggggcctgttaaaggggtgtttgat
aaggagatgtctctcaacaaagccagggagcacacactgctccgctcagaccgaccacca
tatgtcaccattctctctctggtgcgggatgcagcagccaggttacccaatggggaagga
acgagggccgagatctgtgaacttttgaaagactcccagtttcttgctccagatgtcact
agtgcacaggtgaacacggttgtcagtggggctctggatagacttcactatgagaaagac
ccctgtgtaaagtatgacataggacgcaagctctggatttacctgcaccgcagtcgcagt
caagaggagtttgagaggatccaccaggctcaagctgctgctgcaaaagcaagaaaagcc
ttacagcagaaacctaaacctgcatctaagcctaagtccggaagtaaagatggaagcagt
aaaaccacgggatgtctggaggcaggacaggatataggctccaatcccatgtcaccaacc
ccaacaacacctaccccaaacacacccggaacccctatgtcacccttaccctgcacaact
accacgccaacaaagaccggagtcccggatactatcaaaaccagcactggtgttcttatt
gtgtcccctccctcgttgccccaactgggaaccatcttacccaccagtcaggcttgtcca
ccagtttcacagccagtcacatcccaacacgctgctcgcatagtgagtcacctggcggca
ggctccctccctcaggtgcgggttgtttctactcagcctggtctgggttcttcggtagga
ggtcagcaggccacactggtacatcagacccctcaccagatcaggatgccggtgtcaatg
tcagccaagggcatttcacaggcagtggtttctgtgcctctgaggagtcagtctgccagt
agtccagtccaggtgccgaccaccctgtctgtgtctgctgtagctgtggccaaacctcaa
gccagatcacctggtagcccggctaagaaccctgtctcccctgctatgttgcaaggagtc
accagcccgaatatcaaacaggtgtccatcacaggccaattgggaatgaagacaggagga
gcaggaattccaataacggctacaaatttgcgcatccagggtaaagatgtcctacgtctt
tcaccgtcctccatcaccactgacgcaaaaggccagacagtgctgcggatcaccccagat
atgatggcaactcttgccaaatccccagttgcaactgtgaaactcacccctgactttctt
agcagtgccaccacaggcagcaagagcatctcagcaactctccatgtgacgccgcctcac
ccttcaccttcctctgcctccagtgctacatcctgcacaggggaagtacagaccaccaaa
gcgggatctgttaccgctaacttgttgaaggctgcaggagacacagcaatacgtctgatg
cccacgttggctgtcaccatggcagaccaaaaatctaggaccttctccagcgtgacctcc
cctgacaagagtggtgccaccattcggataatgccaggccttggtgttattccacagaaa
cagggtcagaccatcacgatgaccaccactaccggctgtaaaacactcacagcgtctaca
tgtgctaatgtagtgaccatggctgccagtgttgtggctggtgctaaggggatcacagtg
gctcccggagtctcgtgctcacctctgacacttggaactgctacagccaccgtgcggcag
gtcccggctacagtggtcactacacaaacggggaagttacctgcacggataactgtgcct
atctctgtcctgaaccaaccactgaagagcaaaagtgttgtgaccacaccgattgtgaaa
ggaagtcttaacacaaacagtatcagcagtctgggcaggaacatcatcctaaccaccatg
ccggccgggacaaagctgatcgcagggaacaaaccggtcagctttgtcacagcacagcag
ttccagcagcttcagcagcaaggacaggccacgcaggttcgcatccagacggtccaggca
cagcagctccagcagcacatggcaacaggctccccaaaatctgtgtccacagtcgtagtc
acgacagcaccttcacccaaatgtgcccccgatcccccacctgcaccttaa
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