Etheostoma cragini (Arkansas darter): 117955958
Help
Entry
117955958 CDS
T07493
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117955958 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117955958 (trpv1)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117955958 (trpv1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ion_trans
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
117955958
NCBI-ProteinID:
XP_034746651
LinkDB
All DBs
Position
13:complement(1883674..1898409)
Genome browser
AA seq
782 aa
AA seq
DB search
MEKSDMFGFSLETDDRTEEEKMRQKAPKKGGVVSALGLGQELPKAPMDTDYQEEMEKTKP
QIRFNLNFDKGIRGEQQPSQERDSKTFNIDRLFKAVASGEVRKLDGLHQYLHQNMKKLSD
PLYQSYGKTALMKALLHLRDGENKTVELLIDISEKMGDIKEFVNAAYTNSYYKGQTALHI
AIERRSCSYVKLLISKEADVHAKACGIFFQPHDGPNFYFGELPLSLAACTNQPDMVDFLM
DNSYRRADAKMGDSKGNTVLHALVVVADNTEDNTKFITKMYDRILKTTARLHPMLKLEDI
ENHNGLTPLKMAAKTGKIGLFSHILKREFQESHTKHLSRKFTEWVYGPVHSSLYDLASVD
SFEENSVMEILVYGSDIPNRHEMLQLEPLGQILEEKWKTFAGRMFFFNYLVYLLYLIIFT
VVAYYRKGGELPFPVKPTPVGYLYVSGQLVTMLANCYFFLIGIIDMKRKRPKLQTLLIDG
YYEILFFVQGALFLASAGLYLSGRREYLGLLVLCLALSWVNMLYFSRGAKHMGIYSIMIQ
KMILSDILRFLFVYIVFLLGFSAAVVTLLMEPPDNRGRVGLLTTAAPGSECLKPYFRSIS
FTILELFKFTIGMGDMEFTEHYEYKEVFYVLLIGYIILTYILLLNMLIALMNRTVERITT
ESTCIWKLQRAITILDMEKRLSCCLRKRFRCGVEKNIHTALGDDRRRCFRVEEVNWNKWN
SNLGKINEDPGCWDRDQQPDSNTLPDRPSRGRSWRGLFLDGSRPWRQTYEATEMSPLGAS
PV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtcagatatgtttggcttctctctggagacagacgacaggacggaggaggaa
aaaatgcgtcagaaagcgccaaagaagggcggtgtggtttctgccctgggtttgggccag
gagttgcccaaggcgcccatggacaccgattaccaggaggaaatggagaagaccaagccg
caaatcagattcaatctcaactttgacaaagggattcgaggtgagcagcagcccagccag
gagagagacagcaagacgtttaacattgataggttgtttaaagccgtggccagtggggag
gtcagaaagctggatggcctgcatcagtacctgcaccagaacatgaagaaactctcggat
cctctgtaccagtcctatggtaaaactgccctgatgaaggctctgctgcacctcagggac
ggcgagaacaagacggtggaactattaatcgacatttcagagaagatgggcgacatcaaa
gagtttgtgaatgcagcctacaccaacagctactacaaaggccagaccgctctccatata
gccattgagaggaggagttgttcctatgtgaagctgctgatcagtaaagaagcagacgtc
catgccaaagcctgcggaatatttttccagccgcatgatggccccaacttctactttggt
gagctgcctctgtctctggcagcctgcaccaaccagcccgacatggtggacttcctcatg
gacaacagttacagacgagcggacgctaagatgggggactctaaaggcaacacagtgctg
cacgccctggtggtggtggctgacaacactgaggataacacaaagttcattaccaaaatg
tacgaccgcatcctcaaaaccacagccaggctgcaccccatgctgaagctggaggacatt
gagaaccacaacgggctgacgcctctcaaaatggctgccaagactggcaagattgggctt
ttttcccacatcctaaaacgggagtttcaagagagtcacaccaaacatttgtcccgtaaa
ttcactgagtgggtttacgggcccgtccacagttctctgtacgacctggcctctgtggac
tcgtttgaggaaaactctgtcatggagatcctggtctacggcagtgacattccgaaccgc
cacgagatgctccagctggagcctctgggccagatcctggaggagaagtggaagacgttt
gcgggccgaatgtttttctttaactacctggtctacctcctgtacctgatcatcttcact
gtggttgcctactatagaaagggaggagagctgccgtttcccgtcaaaccaaccccagtg
ggttacctgtatgtctcaggccagctagtgacaatgctggcaaactgctatttctttctc
attgggatcatagacatgaagaggaaacgcccaaagctgcagacgttgctgattgatgga
tattatgagattctttttttcgtgcagggcgccctgttcctggcctccgccgggctgtac
ctgtccgggcggcgggagtacctgggcttgctggtgctgtgtctggctctcagctgggtg
aacatgctctacttctccagaggcgccaaacacatgggcatctacagcatcatgatacag
aagatgatccttagtgatatcctgcgctttctttttgtctacatcgtcttcctcttggga
ttttcagcagcggtggtcaccttgctcatggagccccctgacaatagggggcgagtcggt
ttgttaaccaccgctgcccctggttcagagtgcttaaaaccgtacttcagaagcatctcc
ttcaccattctggagctctttaagttcaccatcggcatgggcgacatggagttcactgag
cactacgagtacaaggaggtgttctacgtgctcctcatcggctacatcatcctcacctac
atcctgctgctcaacatgctcatcgccctcatgaaccgcaccgtggagaggatcaccacg
gagagcacctgcatttggaagttgcagagggctatcaccatcctggacatggagaaaagg
ctgtcttgctgtctaaggaagaggtttcgctgcggggtggagaagaacatccacactgct
cttggagatgaccggcgccggtgtttcagagtggaggaagtcaactggaacaaatggaac
agcaacctgggcaaaatcaatgaggatcccgggtgctgggatcgtgaccaacagcccgac
tcgaacactctgccggacagaccaagcagagggaggagctggcgaggcttgttcttggat
ggcagcaggccgtggcggcagacatacgaggccacagagatgagtcctctgggcgcctcg
ccggtctaa
DBGET
integrated database retrieval system
