Etheostoma cragini (Arkansas darter): 117956035
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Entry
117956035 CDS
T07493
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117956035 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117956035 (nup98)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117956035 (nup98)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117956035 (nup98)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117956035 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
117956035
NCBI-ProteinID:
XP_034746769
LinkDB
All DBs
Position
13:complement(25836043..25867771)
Genome browser
AA seq
1817 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTASTFGQQNAGFGATGGFGTTAFGATANTGGLFGATQNKPGG
LFGSSTFSQPAPSATTAGFGFGAATGTSTGLFGSTGTGTSGGLFSQQSNAFGANKPTSFG
SFGTSTSSGGLFGSTNTTSNPFGGGGVASLFGSSGFTAAQQQPGTTVKFNAPTGSDTMVK
AGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMAAPAGGMFGAATATSS
AATGLFGSAAPNTNFSFGQNKSTFGAAAPAGGFGAATGGLFGQQPAPQQANSLFKPFGQA
TTTQSTGFSFGNTNTMGQANTSSIGLFGNTAAPQTGGLFGAAQTSAATGFGAGAGLFGAT
NTGFGTVGTQSLFGNKTAGFGATTTSAPSFGTGTGLFGNKPALTLGTGTNTSTFGFGANP
AAGSLFGNKPATGGLGAALGTSFGAAVGAGQSSLFGNNQGKLGTTLGTMGTFGGAGFNSG
TSLGFGPPQQPIGEQLHSVRANQEPSKASVSCQRLKPTNPTAQKALTTPTHYKLTPRPAT
RVRPKALTSSGAAKSQLFDGLDDDEPSLTNGAFVPRKSIKKLVLKNLNSSQYNSPISEET
DDLASPSEYPQNGHSHLEEEEMPGPSSRTDDDPEVTQFYVNPIAKPIPQGRIQTSLQDTI
SDLNLHKPIRNGLELSSEDVSASLGDESLQEDREEEQQESQQSPHPAGIVLNRVGYYTIP
SLEDLAEMVDENGECVVDNFTVGRKGYGSIFFPGEVNVTGLNLDEIVHFRRKEVIVYPDD
KNKPPQGEGLNRRAEVTLDGVWPNDKTACSQIRSPERLTEMNYESRLEKASRKQGARFLE
YRTETGSWVFEVAHFSKYGLQDSDEDEDVPAKVDPKKLKTTVSLPPSRLQLHLPPSQQQV
APQAQSTVVVDLPGGVTELDSDMADITQSFPTESMLGGEDESDQLLPGAMDVASGKLGGL
TYAELDAVSASGHMASSLGINPHALQIMKASLFAEDDEESDKFQNQGAMKTSTDVSSPRL
ILPGPQGRPTVGGLLQTRFTSGLFSQLSDSPRPPSLSRGSPAATDQSRSLHWAGPGPSSF
LLPPRAPEPSVRTVGVRRLGGPVPLKESVTQGKGSLMMDAALFAGRSFRVGWGPGWTLAH
CGHRLSSPPTKPLDRQELTKTDFSFLPKPARKPLMESPYKVVLEQLVGLVPPAGKSRVEE
EEEEEEGRAVLQRPLEICLKHSVVDTPDASACPVVRPRPGVAALHEYAEWIGDLADEQRD
HDPILGYWAEVWTLCEALWGRLGPADQEPEVEPPSEYEQQLERRRTFSAWLSRGAACRVE
EEVALVGKGRHTEAVFSYLTGNRISEACRLAQKQGDHRLSLLLSQAMGSQYCRDLLALQV
SDWNRMQTDSYLPEERLRIFTLLAGKPVWQSSDSVVNVCSELDWKRCVAVHLWFMLPPTA
SVADALARYEAAFKGSCEGGKYACAPLPPYLEAVQRDMEEEEEEEEEEESKRPLHDLCFH
LLKLYSDRHYSLQQLLDPLTVTWERLDYRLSWHLWGVLQALHYSHLSASRQGLLHASYAA
QLESAGLWDMAVFILLHIPDHTQRERAVREMLTLHVPLQETAQSVRRERFLTQKLLIPER
WIHEAKATRARRDGDRHQEALHLYRAGYWSQCHRLLIQHLASDCIINDNHDYLLEFLEGL
AVPEHSATIQDWDTAGRVYLDYIRVVKTLQDIQQMENAGYELERLYTNVTSLCSRIELLP
CSTARDRLAQSEMAKRVANILRVVLSLQQGEAGSDPLSIPLSQLAPHITRLPMPEDYALE
ELRGLTQSYLRQLIISQ
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggaactcccttcggtggagggacgggggggtttggcacagcg
tcgaccttcggacagcaaaacgcaggctttggggcgacggggggcttcgggacgacggcg
ttcggagccactgccaacaccggaggactgtttggtgccacacagaataagcctggtggt
ctgtttgggtccagcacgttcagccagccggcaccgtccgccaccacagccggctttggt
tttggtgccgcgaccggcacttccaccggcctgtttggcagcaccgggacaggcaccagc
ggcggcctcttctcccagcagagcaatgctttcggggccaataagcccacctcgtttgga
agctttgggacgagcaccagcagcggtggactgtttgggtcgaccaacaccacctccaac
ccttttggtggaggtggtgttgcttccctgttcggaagctcggggttcaccgccgctcag
cagcagccaggaacaaccgtcaaattcaacgcgccaacaggaagtgacacgatggtgaaa
gcaggcgtgaccacgagcatcaataccaagcaccagtgcatcaccgccatgaaggagtac
gagaacaaatccctcgaggagctgaggctggaggactaccaggcgggcaggaagggtcca
accaacccgatggcggcgccggcaggcggtatgttcggtgctgccacggcgacgtccagc
gccgccaccggcctgttcggctccgccgcccccaacaccaacttctcctttgggcagaac
aagagcacctttggagcagcagccccggccgggggtttcggggccgccacgggggggctg
tttgggcagcagccggctccccaacaagccaacagcctgttcaagccgttcggccaggcc
accaccacccagagcaccggcttctccttcggcaacaccaacaccatgggccaggccaac
accagcagcataggtttgtttgggaacacggcagcgccgcagacgggtgggttgttcggc
gcggctcagacgagcgccgccaccggcttcggggcgggcgccgggttgttcggcgcaacc
aacacgggattcgggactgtcggcacgcagagtttattcggtaataagaccgccgggttt
ggcgccaccaccacgagcgccccgtccttcggcaccggcaccgggctgtttgggaacaag
cccgccctcacgcttgggacgggaaccaacacctccaccttcggtttcggtgcgaaccct
gctgccgggagtctgtttgggaacaagccggccaccggaggactgggggcggcgctggga
accagcttcggagcagcagtgggcgctggacagtcctctctgtttgggaataaccagggt
aaactgggaaccacgctgggaacgatgggaactttcggaggggctgggttcaacagcgga
accagcctgggcttcggaccgccgcagcagccaatcggtgagcagctgcactctgtccga
gccaatcaggaaccctcaaaggcttctgtttcctgtcagcgtctgaaaccgaccaatcca
acggcccagaaggctctgaccacgcccacccactacaagctgaccccccgacctgcgacc
cgagtccgccccaaagcgctgacgtcctcgggggccgccaagtcgcagctgtttgacggg
ctggacgacgacgagccctcgctcaccaacggagccttcgttcccaggaagagcatcaag
aagctggtgctgaagaacctgaacagcagccagtacaacagtccaatcagcgaagagacc
gatgacctcgcttcaccttcagagtacccacagaacggacacagtcatttggaggaggag
gagatgcccggtcccagcagccggacagacgacgaccccgaggtcacacagttctacgtc
aaccccatcgccaagccgatcccgcagggccgcatccagactagtctgcaggacacgatc
agtgatctcaacctgcacaaaccaatcaggaacggactggagctgagcagcgaggacgtg
tctgcgtctctgggagacgagtctttacaggaggacagggaggaggagcagcaggagtcc
caacagtctcctcacccagcaggcatcgtcctgaaccgggttgggtattacaccatcccc
tccctggaggatctggctgagatggtggatgaaaacggagaatgtgtagtggataacttc
accgtgggcagaaaaggctacggctccatcttcttccccggcgaggtgaacgtgacggga
ctgaacctcgacgagatcgtccacttcagacgcaaggaggtcatcgtgtacccggacgac
aaaaacaagcctccacagggggaggggcttaacaggcgagcggaggtgactctggacggc
gtttggcccaacgacaagacggcgtgctcccagatccggagccccgagcgtctgacggag
atgaactacgagagtcggctggagaaggcctcgcggaaacagggagcccgtttcctggag
tacaggaccgagaccgggtcctgggtgttcgaggtcgcccatttctccaagtatggcctc
caggactctgacgaggacgaggacgtcccggccaaggttgaccccaagaagctgaagacg
acggtgtcccttcccccctcccggctgcagctgcacctccccccctcccagcagcaggtg
gcgccacaggctcagtcgactgttgtcgtggatcttccgggcggcgtgacggagttggac
agcgacatggccgacatcactcagagcttcccgacagagagcatgctgggaggagaggac
gagagcgaccagctgttaccgggggcgatggacgtggcgagcgggaagctcggaggtttg
acctacgctgagctggacgccgtctctgcatccggccacatggcgtcctcgctggggatc
aacccgcacgcactccagatcatgaaggcgtctctgtttgccgaggatgacgaggagagc
gacaagttccagaatcagggagcgatgaagacgtctacggacgtctcgtcccctcgcctc
atcctgccgggacctcagggccgacccaccgtgggcggtctccttcagactcgttttacg
tccggcctcttctctcagctgtccgactccccccgtcctccttccctgtcccgggggtct
ccagcagccactgatcagtcccggtcgttacactgggccggaccgggcccttcatccttc
ctgctgcccccccgagctcccgagccatcggtccggacggtgggcgtccggcggctgggg
ggccccgtccccctcaaagagtcggtcactcaggggaaggggagtttgatgatggatgcc
gccctgtttgcgggtcgttcctttcgggtggggtggggccccggctggacgctggcgcac
tgcggccaccggctgagctccccccccaccaaaccgctcgaccgccaagaactcaccaaa
acggacttcagcttcctgccaaaacctgccaggaaaccgctgatggagagcccctataag
gtggtgttggagcagctggttggtctggtgcctccggctggaaagagcagagtggaggaa
gaggaggaggaagaggagggccgggcggtgctgcagcgccccctggagatctgtctgaag
cacagcgtcgtggacacccccgacgcctccgcctgccccgtggtgcggccgcggcccggc
gtggcggcgctgcacgagtacgccgagtggatcggagacctggccgacgagcaacgggac
cacgaccccatcctgggttactgggccgaggtctggaccttgtgcgaggccttgtggggc
cggctgggtcccgcggaccaggagccagaggttgagccgcccagcgagtacgagcagcag
ctggagaggaggcggaccttctccgcctggctgtcccgcggcgccgcctgcagggtggag
gaggaggtggcgttggtggggaagggccggcacacggaggccgtcttcagctacctgacg
gggaaccgcatcagcgaggcctgtcgcctggcgcagaaacaaggagaccaccgtctgtcc
ctgctgctgtcccaggccatggggtctcagtactgccgggacctgctggcccttcaggtc
tccgactggaaccgcatgcagaccgacagctacctgcccgaggaacggctgcgcatcttc
acgctgctcgccgggaagcctgtgtggcagtcgtcggactctgtggtcaacgtgtgctct
gagttggactggaagcgctgcgtcgctgtccacctctggttcatgttgccccccaccgcc
tccgtggcggacgccctcgccagatacgaggccgccttcaagggctcgtgtgaggggggt
aagtacgcctgtgcccccctgcccccgtacctggaggcggtgcagcgggacatggaggag
gaggaggaggaggaggaggaggaggagtccaaacggccgctgcacgacctctgcttccac
ctgctcaaactctacagtgacagacactacagcctgcagcagctgttggaccccctgacg
gtcacctgggagcgcctggactaccgcctgagctggcacctgtggggcgtcctgcaggcg
ctgcactacagccacctgagcgcctcgcggcagggcctcctccacgccagctacgccgcc
cagctggagagcgccggcctgtgggacatggcggtcttcatcctgctgcacatccccgac
cacactcagcgggagcgggcggtgcgggagatgctgaccctccacgtcccccttcaggag
acggcccagtcggtccggagggagcgcttcctgacccagaagctgctgatcccggagcgg
tggatccacgaggccaaggccacccgggcccgccgcgacggggaccggcaccaagaggct
ctgcacctgtaccgggccggatactggagccagtgtcaccggctgctgatccagcacctg
gcctcagactgcatcatcaacgacaaccacgactacctgctggagttcctggaggggctg
gcggtccctgaacacagcgccaccatccaggactgggacaccgccgggagggtctacctg
gactacatccgggtggtcaagaccctgcaggacatccagcagatggagaacgccggctac
gagctggagcgtctctacaccaacgtgacgtctctgtgcagcaggatcgagctcctgccc
tgcagcaccgccagggaccgcctcgcccaatcagagatggcgaagcgtgtggcgaacatc
ctgcgggtggtgctgagtctgcagcagggcgaggcgggctcggaccccctcagcatcccc
ctcagccagctggcgccccacatcacccgcctgccgatgcccgaggactacgcgctggag
gagctgcgggggctcacgcagtcgtacctgcgccagctcatcatcagccaatga
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integrated database retrieval system
