Etheostoma cragini (Arkansas darter): 117956059
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Entry
117956059 CDS
T07493
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03440
Homologous recombination
ecra03450
Non-homologous end-joining
ecra04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117956059 (rad50)
03450 Non-homologous end-joining
117956059 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
117956059 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecra03032
]
117956059 (rad50)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117956059 (rad50)
DNA replication proteins [BR:
ecra03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117956059 (rad50)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117956059 (rad50)
BRCA1-C complex
117956059 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
117956059 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
SbcC_Walker_B
AAA_15
ABC_tran
zf-met
AAA_16
AAA_29
AAA_13
AAA_22
DUF749
Motif
Other DBs
NCBI-GeneID:
117956059
NCBI-ProteinID:
XP_034746794
LinkDB
All DBs
Position
13:17090217..17117027
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLRYATAGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLKQTHTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASRDS
IQQIESQIDPLENRLTDIDTKLGKVMKLDNDIKALDSRKKQMEEDNKELEGTMEQVFQGS
DDQLQDIYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTQVRSLASYLEMEGYDRPPFTTLQLDSFHRHVTQRLEQEKETASQVMVDLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSSRLQELENE
LTKVERELQSAVQSSNVEELKAEVIELQREKAELDQAQRQLDQEMGMLNTHTTARTQVDM
LKKDKTEKEEQVRKIKSRHSEDLVLLLGHFPNKRELEDWLYAKSKEINNTRDKLAKLNKD
LASSEQNKSHIAAEVRKKEQQLVIDEEKFFNVCGSQDLEQDLGKLREDLEKISKQRSMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKEKKRDEMMALRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGDVEEQEALLATLMS
EEETAKACLQDISLMDRYLMDLKELERKLAQQAAKLQGVDLTRTVQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQILKGSVNETRAEKLQLSSDMQKQQQLEEQCVEFTAEIQA
LTRDIREAKEQLSPLAATLEKLQQEKLELVERKRQRQEEGQEKINAIKEKVKAISTLERD
ITKYVEDSKEEYKEQKESELQETNTQLHEAEKCKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRMEELKELVAKREALMKDMGNMQVLQLRQERREVDRKLEDLKKNRSIALGRQKG
FEEEILHYRKELREDQYDKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctaggggtgaggagctttgggattgaggataaa
gataaacaagtcatctcgttcttcactccactgactgtgctggttggacccaacggtgca
gggaaaacgactattattgagtgccttaggtatgcaacagcaggagaacttccacctgga
tctaaaggaggggcatttgttcatgatccgaaggatgcccatgagacggatgtgagagca
cagataagactcttattctctgacgtcaatggagagaaagtgactattcatcgatctatg
tcctgcactcagaaggcaaagaactactctttcaaaagcttggagcaggtcattaccaga
ataaaagacggtgagaaggtgagcttgtcgtcgaagtgtggcgaactggatcgggaaatg
atttcttcactgggtgtgtccaagcctgtgctgaatcatgtcatcttttgtcaccaagaa
gagtctaactggccacttagcgagggcaaagcactcaaagacaagtttgactccatcttc
gctgcaaccaagtatatcaaagctctggagacgatgcgtcagctgcgtctcaaacagact
cacacagtcaaagagtgtcaggtggagctgcgctacctgaagcaaaacaaggagaaagcc
cagcaaattagagagaccgtggccaccaaggaggctcagctgatggcttctagagacagc
atccagcagatagagagccagattgatccactggagaatcgtcttacagatattgacacg
aaactggggaaagtgatgaagctggacaacgacatcaaggctttagacagcaggaagaaa
cagatggaggaggacaacaaggagctggagggaacgatggaacaggtgttccagggttca
gacgaccagctgcaggatatttaccagaaccaccagaggacggtgagggagaaggagcgg
aggctgacagactgccagaaggagctggagagagctggtcgggagtgtcaaagactcaac
agagtcaaggccgatctgctggtagaacaaggtcgtcttcagctagaagctgaccgccac
actcaaaacatcaagaaccgcgacactcaggttcgctctttggcttcctatctggagatg
gagggttacgaccgaccacccttcaccactcttcagcttgatagctttcatcgtcatgtc
acacagagactggagcaggaaaaagagacagccagtcaggttatggtggacctgcaggaa
aaggagcagcagaaacagcagtccattgatgaaatgagggataagaagacaggcttggag
agaaccgtggagttgaagagagacctgcaggggaagaagcagcaagaactaagaaacatc
agggcagagctgcagaggctggagggttcgtctagccgactgcaagaactggagaatgaa
ctgactaaagtggagcgtgagcttcagagtgcagttcagagctcaaacgtggaggagctg
aaagccgaggtcattgagctccagagagaaaaggcagaacttgaccaagcacagagacag
ctcgaccaagagatggggatgctgaacacacacactactgcacgcactcaggtggacatg
ctgaaaaaggacaagacagagaaggaggagcaggttcgtaagatcaagtctcgtcacagt
gaggatctggtgttattgctgggccactttcccaacaagagagagctggaggactggctc
tatgccaagtctaaggaaatcaacaacaccagggacaaactcgccaaactcaataaggac
ctggcatcaagtgagcagaataaaagtcacattgctgctgaagtacggaagaaggagcag
cagctagtcatcgacgaagagaaattcttcaatgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgcgagaagatctggagaagatttccaaacaaagatccatgctagcc
ggagctactgcggtgtacacccagttcatcagccagctgacggaggagagagagccctgc
tgccctgtgtgccagcggaccttcccctcagaatctgatctgcaagaagttatcagtgac
atgcagtccaaactacgcctggtgccagacaagctaaaaaacacagagcaggacctgaag
aggaaggagaagaaaagagatgagatgatggctctcagacctgtcaggcagtccattgta
cagtttcaagaaaaggagttgcctgagttgagaaaccgcctgcagactgtgaacagagaa
atcgagaggctaaagggggacgtggaggagcaggaagctctgcttgctaccctgatgtca
gaggaggaaacagccaaggcttgtctgcaagacatctctctaatggacagatacctgatg
gaccttaaagagttggagaggaaattggctcagcaggcagccaaactccagggagtagac
ctgaccagaacagtccagcaagtcagtcaggagaaacaagaaactcagcacaagctagat
accacctccagcaagatggagctgaagcgtaagctgatccaggaccagcaggatcagatt
cagatattgaaaggttctgtgaatgagaccagagcagagaaactccagctgagcagtgat
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcactgctgaaatccaggcc
ttaaccagggatatcagggaggcgaaggaacagctgtcccctttggctgctactctggag
aagctgcaacaagagaagctggagttggtggagcgcaagaggcagagacaggaagagggg
caggagaagatcaatgccattaaagagaaagtgaaggcgatcagcaccttggaaagagac
atcaccaaatacgttgaagacagcaaagaagaatacaaagagcaaaaggagtctgagctt
caagaaaccaacactcagctccatgaggctgagaagtgtaaggagaagataaacaaggag
atgggaaacattcgtcaggacatagacactcaaaaggtccaggagcgctggctgcaagac
aaccttaccttgaggaaacgtatggaggagttgaaggagcttgtggctaagcgggaggct
ctaatgaaagacatgggcaacatgcaagtcttgcagctacgccaagaacgtcgtgaagtg
gatcgcaagttggaagatttgaagaagaaccgcagtattgcactgggtcgtcaaaaaggt
ttcgaggaggagatactgcattacagaaaagagctgcgagaagatcagtatgacaaagct
gatgagcgctacaaaaacaagatgatcacaatgaggacaacagagctggtcattaaagac
ctggatctctactacaaggcccttgatcaaaccatcatgaaattccacagcatgaagatg
gatgagatcaacaagattatccgagacttatggcgcagcacctacaggggtcaagacatt
gagtacgtggagattaggtctgatgtggacgaaaactcatctgctggagtcaggcggagg
gtttacaactacagagtagttatggtgaaaggagacaccgctttggatatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccctgatcatccgtctagcgctggcagagacc
ttctgcctgaactgtgggatcctggccctggatgagcccaccaccaacttggaccgagac
aacatcgagtcattggcacacgccctcgtagaaatcatcaagagtcgctctcgccagcgt
aactttcaacttctgatcatcacccacgacgaggactttgtggagcttcttgggcggtcc
agttacattgagcacttctaccgcatccgtaagaaccaggaccagaactctgagatcaca
aagtgcagcatcacctccctctcatcctatctccactga
DBGET
integrated database retrieval system
