Etheostoma cragini (Arkansas darter): 117956280
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Entry
117956280 CDS
T07493
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117956280 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117956280 (skiv2l)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117956280 (skiv2l)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117956280 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
117956280 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
117956280
NCBI-ProteinID:
XP_034747148
LinkDB
All DBs
Position
14:complement(17726755..17741125)
Genome browser
AA seq
1245 aa
AA seq
DB search
MDRINVPPTGPMDLPLSLLEMGCSGRFEIITHPIPNQPLPPQSTLPHGLPPTSLSLETEV
EKQFLRDAAWLPIHDTDFAFQKFLKVTQREVNVDSLINCTPSSLHSGVSVVRDPTTGMLL
DFTEVLLENTSLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIQKKSELE
EDIDFENDLLRIPPGFKEGMDFTDKDAKIAKAEVNLMSLLSTLNDITDLQPEAEEKEEGK
ETKEAPKLPRTNSLEDLGIKDVVSSSTPSDKGKDEKSQPKENSEKNKKWAIPVNITSPCD
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSDWIGRIKKKH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLMDATGNFLTKGYYTAVDAKKERTSKHAQ
SFGTKITSHNTSASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLESMDMTTS
VEKAEIHSFFQKSLSRLRGGDRQLPQILVMRELLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVQELSDLRVMMLGKPTTLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISELKKILSSLPPLDAEGQLSDMLPYYHTVTELRTTTEALQRAILESVNGL
KALSVGRVVLVNNKQHLNALGVILQVSSDSVNRTFTALVICEKGNEEGEGKENNNTFPHF
YNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFRLDPPGQAI
STATQELLRLAEANPSGIATLDPVNDLQLKSVDVVEDSMRVRVLQDILRGFNCIHSPTFA
EQFARVKDRMSVQEELDQLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGRVA
CQISSHELLLTELLFENVLSPLAPEDSAALLSCLVFTQNTQVEPHITNTLKEGIDRVLSV
AKRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCIQ
RLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaacgtgccccccacgggccccatggacctgccgctgtccctgctggag
atgggatgctctggcaggtttgagatcatcacacaccccatacctaaccagcctttacct
ccacagagcacactccctcatgggcttcctcccaccagccttagcctggagacagaagta
gagaaacagtttttacgggacgctgcctggcttcccattcacgacacagactttgccttc
cagaagtttctcaaggtgactcagagagaagttaatgttgattctctaatcaactgcact
ccatcttcacttcactccggtgtctccgttgtcagagatccaacaacagggatgctgctg
gacttcacagaggtgttactggagaacacaagcctgtcagcaaagaactctctttcatta
caacgccaacccggacctccttcagagagccttcgaggaagcaacaccaactaccccttc
ctccccggaggaatggaggagctcactctggaccaaatccagaagaaatccgagctggag
gaggacatagactttgagaatgatttactcagaatcccacctggatttaaagagggaatg
gacttcactgacaaagatgccaagattgcaaaggcagaggtcaacctcatgtccctcctg
tccacattgaatgacatcactgacttgcagcctgaggcagaggagaaagaggaaggcaaa
gaaactaaagaagctccaaaactacccagaaccaacagccttgaagacctgggcatcaag
gatgttgtgtcatcatcaactccctcagataaaggaaaagatgaaaaatcccagcctaag
gagaactcagagaaaaacaagaaatgggccatccctgtcaacataacttcaccctgcgat
gatttctataaacgcatccccaacccggctttcaagtggccatttgaactggatgtcttc
cagaaacaggctgtgctgagactggaggcccacgactctgtgtttgtagccgcacacaca
tcggccggcaaaacggtggtggccgaatacgccatcgctctctcacagaaacacatgaca
aggaccatctacacctctcccatcaaagccctgtccaatcaaaagttcagggactttaaa
aacacctttggagatgttggacttctgacgggcgacgtgcagcttagccctgaatcttca
tgcctcatcatgaccactgagatcctccggtccatgctttacaatggatcggaagtcatc
agagacttggagtgggtgatttttgacgaggttcactacatcaacgatgctgagagaggg
gttgtgtgggaggaggttttgatcatgctccccgatcacgtcagtatcattctcctcagc
gcaacagttccaaatgctctggagtttagcgactggatcggtcgtataaagaagaaacat
atttacgtgatcagcacaatgaagagacctgtgcctttggagcattatctgtacactgga
aacagcaccaagactcagaaagagatgttcctgctgatggatgctacagggaacttcctc
actaaagggtattacactgctgtcgatgccaaaaaggagcgcaccagcaaacatgcccaa
tcatttggcacaaagattacttctcacaacacctcagctagtcaggaccgatcggtgtgg
ctcactctcctgcacttcctgtcccagcggcagcagacaccggtggttgcgttcacgttc
tctcggacacggtgtgacgacaacgcccgctcgctggaatccatggacatgaccacgtcc
gtagagaaggccgagatccactctttcttccagaagagcctgagtcgcctccgaggagga
gaccgacagctgcctcagatcttggtcatgagggaactgttgaaaaggggaatagcagtc
catcatagcgggatcctgccgattctaaaggaggtcattgagatgctcttctcccgaggt
ctcgtaaaggtgctgtttgccacagagacatttgcaatgggagtaaacatgcctgccagg
actgtggtgtttgacagcatcaggaaacacgacgggaccggctttagaaatctgctgcca
ggtgagtatattcagatggcgggcagagcaggcaggagaggtctggacgccacaggcact
gtcatcattctgtgtaaagccggagttcaggaattgtcagatctgcgcgtgatgatgctg
ggtaaacccaccacactccagtcccagttcagactgacctacaccatgatccttaacttg
ctgcgagttgaagctctccgcgtgaccgacatgatgaggaggagcttttctgaaagccac
agggacactcaggcccatgaaaagaggatcagcgaactgaagaagatactgtcttctctg
cctcctctggatgcagaaggccagctgtccgacatgttgccctactaccacactgtgacg
gagctacgaaccaccactgaggcactccagcgcgctattctggagtctgtcaacgggctg
aaggctctgtctgtgggtcgagttgtgttggtgaacaacaaacaacatcttaacgccctg
ggagttatcctacaggtgtctagtgactctgtaaatcgcaccttcacagctctcgtcatc
tgtgagaagggcaacgaggaaggagaaggaaaagaaaacaacaacactttccctcacttt
tacaacacggctctctttatacctgaaggcccttgcagccacacggtgcagaagttgaag
cttcaggacatctcagccatcacagtaaaaaccctcaaagtgattccagacaggatcatt
gacaactacaacaagaggcaacagccgcgattcaggcttgaccctcccggccaagctatc
tccacggcaacccaggagctcctgcgattggctgaggccaacccaagcggcatagcgacc
cttgaccccgtgaacgacctccagttgaagagtgttgatgtggtggaggactccatgagg
gtccgtgtactgcaagacatcctcagagggttcaactgcatacactcacctacctttgct
gagcagtttgctcgtgttaaggacaggatgagtgtgcaggaggagctggaccagctgctt
ttcctggtgtcggaccagtctctgtctctcctgcctgaataccaccagaggatcaaggtg
ctgcagtctctccagtacgtcgacagcagcggggccgtgcagctgaaaggccgcgtagcc
tgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaatgtcctgagc
ccactggcgcccgaggatagcgccgctctgctgtcctgtttggtctttacacaaaacaca
caggtggagccgcacattaccaacacactaaaggagggcattgaccgggtgctgtcggtg
gccaagcgtatcggagagctgcagagggattgtgggataccacaaaccgctgaggagttt
gttggccagttcaagtttggcctgacagaggtggtgtactgttgggccagaggcatgccg
ttcgcagagatcgcccagctgacggacgtccaggagggcacggtggtccgctgcatccag
cgcctggatgaggtgctgaaggaggtgcgacaggccgcccgcattgtgggagactccgtc
ctggggagcaagatggagaaagcctccttggccatccgcagggacatcgtattcaccgcc
tccctctacacccactga
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integrated database retrieval system
