Etheostoma cragini (Arkansas darter): 117956326
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Entry
117956326 CDS
T07493
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117956326 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117956326 (smarcc1b)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117956326 (smarcc1b)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117956326 (smarcc1b)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117956326 (smarcc1b)
PBAF complex
117956326 (smarcc1b)
GBAF(ncBAF) complex
117956326 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
117956326
NCBI-ProteinID:
XP_034747210
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All DBs
Position
14:11539916..11549269
Genome browser
AA seq
955 aa
AA seq
DB search
MATMSGGTNLGIPGTSQASSGISAHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCQNLAAVTLQLLQFQEDAFGRQATSPSLTKLPTRCFLDLRPGGGLCHILGTAY
KFKAAQGWRRFDLQNPSRTERNVEMFGSIERALIQNNCLSLPVVYLDPTLDQELTSRLAE
IITKHQGTITEDRTLASHHIYPSSASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEGEVEEPPHSEKPWRVHASWVLDTDVFNEWMNEEDYCVNERNVPIVFRRRIHLKDDQ
DSKHTPFKKRRRSPSPPSSEGRKKGKKGRRRGQQEEELEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEEDFPGREDEEGRGEITRLSDGEDNIPEQTHHII
IPSYTSWFNNNSIQSIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSREKPSDSQNFGLRSDIYTKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQELSVDKVSETANQLDRTELMDAEKN
DINSTTHQVPLRADVLKVESIGAKVEGELVKRENAENILADERDGRGDDDESLGRGEVDE
GRVMEQDLVDGSVAMAAAAALSSAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKLRH
FEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQKEQQGQPGYTVQQSAL
PHPSGQSMPNRMMPGGGNGQTMVPRLSGAPNGMYPSSQPDGIAPAQSGPQASSHS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtctggaggaacaaacctcggcattcccgggacaagccaagccagctcc
ggcatatccgcacaccggaaaaaagacagcagtccgtctgccaggttttgggagagtccg
gatactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccatcgtgtcagaatctggctgcagtaaccctgcagcttctccag
ttccaagaggatgcctttggcagacaagctaccagtcctagtctcaccaaactgcctaca
cggtgcttccttgacctgcgaccaggaggtggactctgccacattcttggcactgcctac
aagttcaaagctgcgcaaggctggcggaggtttgacttgcagaatccgtcaagaactgaa
aggaatgttgagatgttcgggagtattgaaagagcgctgatccagaacaactgtttgtca
ctgcctgtggtatatctggacccaacgctggatcaggagctgactagcagactggcagaa
attatcaccaaacaccagggtacgatcacagaagaccgaacactcgccagtcaccacatc
tacccttcatctgcttctacagaggaagatgaatggatgcgccctgtcatgcggaaagac
aaacatgtgttggtgcactggggcatgcaccctgacagttacgacagttggttatcctca
agtgatgttgaaggagaggttgaagagccaccacattcagaaaagccatggcgggttcat
gcctcctgggttctggacacagatgttttcaacgagtggatgaacgaagaggactattgt
gtgaatgagaggaatgtaccaatcgttttccgccgacgtattcacctcaaagacgaccag
gactccaaacacacccccttcaaaaagagaagacgctccccctcacctccttcctctgaa
ggcaggaaaaaaggaaagaaggggagaaggcgtggacaacaggaggaagagctcgaagag
gacttgaccaaagacatggaggaccctacccctgtcccaaatatggaggaggttatacta
cccaaaaatgtcaacctgaagaaggacagtgagaatactccggtcaaaggagggaccatg
gctgacctggatgaacaggaagaggatttcccaggaagggaggacgaggaggggagaggg
gagattactcgcctgtcagacggggaggacaacatcccagaacaaacccatcacatcata
ataccaagctacacatcttggttcaacaacaacagcattcagtcaatagagaaacgtgcg
ttgcctgaattcttcaatggaaagaacaagtccaaatctccagaaatctacctggcatac
cgtaacttcatgattgacacgtaccggctgaacccccaggaatacctcagctcaacgtcc
tgtagacgcaacctcactggagacgtctgtgcggtcatgagggttcatgcgttcttggag
cagtggggtttgattaactaccaggtggatgcagaaagcagacccctccccatgggaccc
ccacccacccctcatttcaacgtactggcggacacaccgtccgggctggcccccttacaa
cacaaacccctacaggtgtccgcatcgcaacacatgttgtatttccctgaaaagagtaga
gagaagccttcagactcccagaactttggtctgcgctccgacatctacaccaagaaacac
ccaaagactaaaggagcgagtgcaggaagggaatggacagagcaagagactctcttgcta
ttagaggccttagaggtctacagagacgactggaacaaagtatccgagcacgtcggctcc
agaacgcaggacgagtgtatccttcacttccttcgattgccgatagaggacccttaccta
gaagactcctcggcctccctcggcccactggcgtaccagcccgtgcctttcagccaatca
gaaaacccggtcatgagcactgtggccttcctggcatccgtggtggacccacgggtggca
tcgtctgcagctaaggccgcactggaggagttttcccgagtgcaggagttgtcggtggat
aaggtctctgaaacggccaaccagctcgacagaacagagttgatggatgcagaaaaaaat
gatataaactcgaccacccaccaggtccctttgagggcagatgtgctcaaggttgaatcc
attggagccaaagtggagggagaacttgtcaaaagagaaaatgcagaaaatattcttgca
gatgagagagatggaaggggagatgacgacgagagcctagggcggggagaggtggatgag
gggagagtgatggagcaggatctagtggatggcagtgttgccatggcagcagcagctgct
ctgtcctcagctgccacaaaggccaagcacttggcggcagtagaagagaggaaggtcaag
tccttggtggctctgctggtggagacccagatgaagaagctggagatcaaactgaggcac
tttgaggagctggagacaatcatggaccgtgaaaaagaagctctggagcagcagcggcag
cagctcctgtcagagagacagactttccacactgagcagctgaaacaggcagagatgaag
gttcgccagcagaaggagcagcaggggcagcctggatacacagtgcagcaatcagccctg
cctcatccttcaggccagtccatgcccaaccgcatgatgcctggtggaggaaatggccag
acaatggttcctcgactctctggagcccccaacggcatgtacccgtcctcgcagcctgat
gggatagcaccagctcagtcgggtcctcaagcgtccagtcacagctga
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