Etheostoma cragini (Arkansas darter): 117956400
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Entry
117956400 CDS
T07493
Name
(RefSeq) vacuolar protein sorting-associated protein 13C-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117956400
Membrane trafficking [BR:
ecra04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117956400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_M
VPS13_N
VPS13_VAB
ATG2_CAD
VPS13_C
WWE
Motif
Other DBs
NCBI-GeneID:
117956400
NCBI-ProteinID:
XP_034747367
LinkDB
All DBs
Position
1:complement(34257994..34319639)
Genome browser
AA seq
3206 aa
AA seq
DB search
MVFESLVSDLLNRFIGDYVENLDKSQLKIGIWGGNVVLENLKVKENALSDFDVPFKVKAG
QIGKLTLKIPWKNLYNDAVVATLDGLYLLVVPGATIKYDAAKEERYQQEAKQRELQRIEE
ALQTAARRASQSGDLLFSLERVVYKGAPNVSKGSKKHKKPIKGLRKLKRHDNKAGKGGRA
FRFSRCCLMLDQHHIWMERRTCTSRTLLQAYLHLAGPEIRVKTQRSGSEIRGAFFTMQST
DSSSSSRLRPKSWTSRCSLAVCLPVCLPFYLGLGDLQADVLDLQVQPGCLSTCLSLYLGL
GDLQADVLDLQVQPGFGTLELELSRSGLDDLMTAAEKEKLYTAIGYSGSSHNLALPKQYV
SVVVSFQLCRTSVTIRDQPHIPEILKIQIIDLSTRISQRPGAQALRVEVTLQHWFVTGLQ
QRGAEPGGGQGGALPSLIASLGDSTTSLLSVVFELNPEEGGADQLLRVQSQPVELIYDAL
TVNSLADFFHTGGGLDLDVLASATRSKLEEIKEKTAAGLSHIIETRKVLDLRINLKPSYL
LIPKSGFYSETSDLIVVDFGSLQLTSVEQCVSSPSSSLEEIMDRAYERFNVELRRVQVLY
SKSGTDTHTDMVECDSAQVSGDAQVGAPPLPFSSQLTDAERQNGLLQVLLPVPEHTSHPQ
HLNAPREQVTWGLTNLFDLDLEVKVGEVVDLRALQLVVRRLLAAVIVRSSGSSPDTLNLT
QKKCLRDKHMSPGKTYLDMCPPGIDASVLVQAKKTEVFARLRDIVVTDVHPTTVHRKAVS
IVGEEVFSFNLLLFPGATLGDAYSDTSRTDGKLTLRLGCIQIVYLHKFLMSLLASFSFQS
ADEVFVDNFQAAKAAVSAATVQAAEKAASSVRGLAQKSFRLSMDIRLKAPLIIIPQSSSS
HNALVMDLGLLTVANSFSLLSADGFALPAVVDQMDVQLTQLKLSRTTLMPRSSAHLDIQM
LQPINLELSVTRNLSTSWFTRIPGVQVQGELRSLNMSLGEEDLAVLMKILVENIGEGSRD
IRRDAPRHPTQEKQQVEVLPGRELASNHNEAPPENTVNVLLNFEIKEVLLTLTKPRDQVQ
VPFLVFQVAHLGINTQVKQYDMVATTFINRIAMKCLEFKDSRGEPLCLISSSGEAGAELL
KVQYFKADCSAPDFSSVYNNTEQRINVMFMSLDLLLHTEALLSTINFLSAALSSGGETSP
ERDARPRKERTSKSTTVTSPAKSDIIDLKVMMSLGAFNVLVCDQSCNMADIKIQGIHGSL
LMQGTQTHISARLRDFIILNVDPKSIHKKAISIVGDEVFSFSLSLTPKATDGAGYADTSR
SDGRVKLNVGCIQVVYLHKFFMSLLNFADHFQAAKAAVSAATVQAAEKAASSVRGLAQKS
FRLSMDIRLKAPLIIIPQSSSSHNALVMDLGLLTVANSFSLLSVDGYPLPVAVDDTHVQL
TQLKLSRTFLDLVSEQPGAELLEPVNLQLNIRRNLAASWYHKMVAMEINGDLKPMKVELS
QEDLAVLLRIMTENLGEASGLDPPAPRPDSGLQLRVAGAPPTGEGGKPPGTSDADEDEAL
VTMQFNFNIKSLALVLFSNAPQQLAHPQRQQNLRLGELALHQLKTSGKILRDGSMEVTAV
LHSCTLEDLRTGLDRVTSRMVGRRDEDSPEAMMDVTYRQSATQRDVVAILQKLYLCASVE
FLMAVADFFLQALPQSQTGTAGKLRQNATAGLAESDRLPLRQTTEPRANAKPVSAVRTRL
RAVVLDPEVVFVASLMKADAPALTSSFQCNVSLQDEPDGSKSMRANLREVKVLACRFIRD
KDDQAVTTVLRPCSVTMETRSHPNQPLSGCVTVEEVIVKISPFILNTVMTITAAMTAKQG
AEQREEPQADVSDLWSVMNIYGCNYWFLGVDPATEVTETFRDPDGRSEGETFTAEVKVVQ
VTLESGFGHRTVPLLLAESTFRGSAQNWSSLLQLRADMSLEVNYFNEVQAVWEPLIERVD
AGRRRWNLELEMKNHPIMDRSPVHGDDFVILPEPCTAVSVCSKDTMNITVSQCSLSVLHN
LAKAFSESTDSTFDSSLREKAPFTIRNCLGVPVAVQLSTNLRPVPESILQLPVGHSMNQD
QDQESILQLPVGHSMNQDQDQQSILRLPAGHSVDLQHSSYEPASRGKLSALQRQESRMFN
LSIVPSGYSEISSVSVDRPGRVLFTVRSPEDAVSVLLQVDAAEGDKVVTLRSALQIMNHF
SVPFTVLRYCPVSRCLQTVGQAEPETEFHVTLETYRNSAESYDVQEGSKSDLLNARVSGE
ILSLALIRYQGRDWQGHLRIQQDMPEFLSLCLVCDSDASMTLDLNVHVARTSGRLLLSLF
SPYWIINKTSRVLQYRAEDFSVKHPADYRDIVLFSFRKKNLFSKSKIQLCVSTSSWSDGF
SLDTVGSYGCVRCPSNNMDFLVGVRIQMSNFNLTRIVTMSPFYTLVNKSLYELEVGEVST
QTPTQTPIQTHTRWHYISSTECLPLWPDSSCEKLCVRVVGSESSSKSFFFNRQDNGTLLS
LDTCGGVMVDVNISDLSTIISFTDYYEGSAPALLLNHTPWVSVSYRQSGSAVDHQLKPGE
ARRFAWDDPAGVRTLSWTCRDHSGELDLLKDEVGQFSYDSLSQVHWVSFLDGRQRVLLFT
EDVAVVTKARQAEELEQFQQEVKVSLQHLGLSLVNNATRQEIAYIGIPSSGVVWEMKPRN
RWKSFSQKNIDLLEKTFQSQKRGWVTLESNLEVNLSDAIMMMRRPISCPVRRNFLSGIQV
EFKQSPHQRCLRAQLHWLQVDNQLPGAIFPIVFHPVPPPKSIALDSEPKPFIDVSVITRF
NRHSSVMQFKYFMALVQEMAVKIDQGFLAAILALFTPAADLHTDRQKSRLLERDLQLLQT
ELTEASLTDSSGLSFFQHFHISPIKLHLSLSLGSGGDEDSAAETAALQSLNLLLKSIGAT
LTDVDDLIFKLAFFEVRYQFYRRDKLMWAVIRHYTEQFLKQMYVLVLGLDVLGNPFGLIR
GLSEGVEAFFYEPFQGAVQGPEEFAEGFAIGVRSLLGHTVGGAAGMVSRITGSVGKGLAA
ITMDRDFQQRRREEMNRPPRDFGESLAKGGKGLLKGVVGGVTGIVTKPVEGAMKGGAAGF
FKGIGKGLVGVVARPTGGIVDMASSTFQGIQRGHERAAESTEEVTKLRPVRLIREDGIIR
PYDLTESQGFDLFQPDEELTDQRDSF
NT seq
9621 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgagtctctggtcagcgacctgctaaacaggttcatcggagactacgtggag
aacctggacaagtcccagctcaagatcgggatctgggggggaaatgtagttctggagaat
ctgaaggtgaaggagaacgcgctgagcgacttcgatgtcccatttaaagtgaaggcggga
cagatcgggaaactgacgctgaagatcccctggaagaacctgtacaacgacgccgtggtc
gccacgctggacggactgtacctgctggttgtccccggagccacgataaagtacgatgca
gcgaaggaggagcgctaccagcaggaggcgaagcagagggagctgcagcgtatcgaggag
gcgctgcagacggctgcacgcagagcgtctcaatctggagatctgctgttcagcctggag
agggttgtttacaagggggctcccaacgtctccaaaggaagtaaaaaacacaaaaagcct
ataaaaggcttgaggaagctgaaacgccatgacaacaaagcaggtaagggtggccgggcc
ttcaggttctctcggtgctgcctgatgttggaccagcaccacatttggatggagcgccgg
acctgcacctccaggacgctgttacaggcgtacctccacctggcagggccagagatcagg
gttaagactcagagatcagggtcagagatcaggggggcgttcttcaccatgcagtccacc
gactccagcagctccagcaggcttaggccgaagtcctggacctccaggtgcagcctggct
gtctgtctacctgtctgtctacccttctacctgggccttggtgatctccaggccgatgtc
ctggacctccaggtgcagcctggctgtctgtctacctgtctgtctctctacctgggcctt
ggtgatctccaggccgatgtcctggacctccaggtgcagcctggctttgggactctggag
ctcgagctcagccggtccggtttggacgacctgatgacggctgcggagaaagagaaactc
tacacggccatcggctacagcggcagctcccacaacctggctctgccaaaacagtacgtg
tcggtggtcgtctccttccagctctgcaggacctctgtgaccatcagggaccagccccac
atccccgagatcctgaagatccagatcatagacctgagcaccaggatctcccagagacca
ggagcacaggccctcagggtggaggtgacgctgcagcactggtttgttaccggtttacag
cagcggggggctgagcctgggggggggcaggggggggctttgccctccctcatcgcctcc
ctcggggactctactacttctctgctcagcgtggtgttcgagctgaaccccgaggagggg
ggcgccgaccagctgctccgggtccagtcccagccggtggagctgatctacgatgcgctg
acggtgaacagcctggccgacttcttccacaccgggggggggctggacctggacgtcctg
gcgtcggcaacgcgctccaaactagaggagatcaaagagaaaactgctgcaggtctgtct
cacatcattgagaccaggaaggtcctggacctgagaatcaatctgaaaccgtcctacctg
ctcatcccaaagtctggtttctatagcgaaacgtcagacctcatcgtcgtggactttggc
agcttacagttgaccagtgtggagcagtgtgtatcttccccctcctcgtctctggaggag
atcatggatcgagcctacgagagattcaacgtggagttacgacgagttcaggttctctac
agcaaatcaggtacagacacacacacagacatggtcgagtgtgactctgcgcaggtaagc
ggcgacgctcaggtcggagctccgcctcttcccttcagctcccagctgacagacgctgag
agacagaacggtcttctccaggtcctcctgccggtacctgaacacaccagtcacccacag
cacctgaacgcaccacgggagcaggtcacatggggactaactaacctctttgacctcgac
cttgaagtgaaggtcggtgaggtcgtggatctccgagcgctgcagctcgtcgtcaggaga
cttctcgctgccgtcatcgtccgaagcagcggcagctcccccgacaccttgaacctgaca
cagaagaaatgtctcagggacaagcacatgtccccaggtaagacctacctggacatgtgt
cccccagggatcgatgcgtcagtgttggtgcaagccaagaagactgaggtgttcgctcgt
ctccgggacatcgtggtcacagatgtccaccccacaactgtccacagaaaggcagtgtcc
attgtcggcgaggaggtgttcagcttcaacctcttgttgtttccgggggcgacgctgggg
gacgcttacagtgacacgtcgaggacggacgggaagctgacgctgcgtctgggctgcatc
cagattgtctacctgcacaagttcctcatgtctctgctggcgtcttttagctttcagtct
gctgatgaggtgttcgtggataacttccaggcggccaaagcggcggtgagcgcggcgacg
gtccaggcggcggagaaggcggcgtccagcgtgcgcggtctggcccagaagagcttccgt
ctgtccatggacatcaggctgaaagctccgctcatcatcatcccccagtcctccagctcc
cacaatgcactggtgatggacctagggctcctcacggtggccaacagcttctctctgctg
tcggccgacggcttcgcgctgcccgccgtcgtcgaccagatggatgtgcagctcacgcag
ctcaaactctccaggacaacgctgatgccgcggagctccgcccacctcgacatccagatg
ctgcagccaattaacttggagctttccgtcaccaggaacctgtctacttcctggttcacc
cggatccccggagtccaggtccagggagagctgcgctcccttaatatgagtctgggtgag
gaagaccttgcggtgctgatgaagatcctggtggagaacatcggggagggaagcagagac
attagaagggacgccccgagacaccccactcaagagaagcagcaggttgaggtgttacct
ggccgagagttggcgtctaaccataacgaagctccgcccgaaaacaccgtcaacgttctg
ctcaactttgaaataaaagaggtgctgctgaccctgacgaagcccagagaccaggtccag
gtgccgttcctggtctttcaggtggctcacttgggcatcaacacgcaggtgaagcagtac
gacatggtcgccacgaccttcatcaacaggattgccatgaagtgcctggagttcaaagac
tcgagaggcgagccgttgtgtctcatcagctcgtcgggggaggccggggccgagctgctc
aaagtgcagtacttcaaggccgactgctcggcgcccgacttctcgtcggtctacaacaac
acggagcagaggatcaacgtgatgtttatgtctctcgaccttctcctccacactgaggct
ctgctgtcgaccatcaacttcctgtcggcggcgttgtcgtccggcggtgagacgtctccg
gagagagacgccagacccaggaaagagaggacgtccaaatccaccaccgtgacatcacct
gctaagagtgacatcattgacctgaaggtgatgatgtcactgggagccttcaacgtgctg
gtgtgtgaccagagctgcaacatggccgacatcaagatccaagggattcatggctctctt
ctgatgcaaggaacccagactcacatctccgcgcgcctcagagacttcatcattctcaac
gtcgaccccaaaagcatccacaaaaaggcgatctccatcgtgggggacgaggtgttcagc
ttctcattgagtctgacgcccaaagccaccgacggcgctggctacgccgacacgtctcgg
tccgacggccgggtgaagctcaacgtgggctgcatccaggtggtctacctgcacaagttc
ttcatgtctctgctgaactttgcagaccacttccaggcggccaaagcggcggtgagcgcg
gcgacggtccaggcggcggagaaggcggcgtccagcgtgcgcggtctggcccagaagagc
ttccgtctgtccatggacatcaggctgaaagctccgctcatcatcatcccccagtcctcc
agctcccacaatgcactggtgatggacctagggctcctcacggtggccaacagcttctct
ctgctcagcgtggacggatacccgctgcccgtcgccgtcgacgacacgcacgtgcagctc
acgcagctcaaactctccaggaccttcctggacctggtctcggagcaacccggggccgag
ctgctggaaccagtcaacctgcagctgaacatcaggaggaacctcgcagcttcctggtat
cacaagatggtcgccatggagatcaatggagatctgaagcccatgaaggtggagttgagt
caagaggacctggcggtgctgctgaggatcatgacggagaacctgggcgaggccagcggt
cttgacccccctgccccgagaccggactctggtctgcagctccgcgtggccggagccccc
cccacaggtgaggggggcaagccccctgggaccagtgatgcagacgaggacgaagctctg
gtgacgatgcagtttaacttcaacatcaagtctctggctctggttctgttcagcaacgcc
ccccaacagcttgcgcacccccagcgccagcagaacctgcgtttgggagagttggcgctg
caccagctgaaaacctcggggaagatcctgagggacggcagcatggaggtgacggccgtc
ctccacagctgcaccctggaggacctgaggacaggcctggaccgggtcacctcacggatg
gtgggtcggcgagacgaggactcccccgaggcgatgatggacgtgacgtaccggcagagc
gccacccagcgggacgtggtggctatcctgcagaaactctacctgtgtgccagtgtggag
ttccttatggccgtggccgacttcttcctccaggctctgccgcagagccagaccggcacc
gccggcaaactgagacagaacgccactgccggcttggcagagagcgacagactgccactg
agacagaccaccgagccccgagccaatgccaagcccgtgtcggcggtaaggacccgtctg
cgggcggtggttctggacccggaggtggtgttcgtggcgagcctgatgaaggccgacgcc
cccgccctcacctcctccttccagtgtaacgtgtcgctgcaggacgagccggacggcagt
aagagcatgagggccaacctgcgggaggtgaaggtgcttgcctgccgcttcatccgggac
aaggacgaccaagctgtcaccaccgtgttaagaccctgctcggtcaccatggagaccaga
tcccaccctaaccaacccctgagtggctgtgtgacggtagaggaagtcatcgtcaagatc
tctccgttcatcctcaacaccgtgatgacgataacggccgccatgacggcgaagcagggt
gccgagcagagggaggagccgcaggcggacgtcagtgacctctggtccgtcatgaacatc
tacggctgcaactattggttcctgggggtggacccggccaccgaggtcactgagaccttc
agggacccggacgggcgcagcgagggtgagacgttcaccgccgaggtcaaggtggtccag
gtgactctggaatctggttttggtcaccggacggtccccttgctgctcgctgagtccacc
ttcagaggatcggcccagaactggtcctccctgctgcaactcagagccgacatgtcactg
gaggtgaactactttaacgaggtccaggcggtctgggagccgctgattgaacgggtggac
gctggcagacgccgatggaacctggagctcgagatgaagaaccaccccatcatggacaga
agtcccgtccacggagacgacttcgttattcttcctgaaccatgcacggccgtcagcgtc
tgctccaaagacaccatgaacatcacagtgtcccagtgcagcctcagcgtcctgcacaac
ctggccaaggcgttctccgagagtacagactccacctttgactcgtctctgagagaaaaa
gccccgttcaccatccggaactgtctgggggttcccgtggcggtacagctaagcaccaac
ctgcggccggtgccggaatcgatcctgcagctgccggtgggacacagcatgaaccaggac
caggaccaggaatcaatccttcagctgccggtgggacacagcatgaaccaggaccaggac
cagcaatcgatcctgcggctcccggcgggacacagcgtagacctgcagcactcgtcgtat
gaaccagcatcccggggaaaactgtccgctctgcagcggcaggagagccgcatgttcaac
ctcagcatcgttccctccggctacagtgagatctccagtgtctccgtggacagaccgggt
cgcgtcctctttaccgtccgtagtcctgaggacgctgtgtccgtcctgctgcaggtggac
gccgccgaaggggacaaggtcgtcaccctgcgctccgccctgcagataatgaaccacttc
tcagtaccgttcaccgtgctccggtactgtcctgtgtcccggtgtctccagaccgtagga
caggccgagccggagacagagttccatgtcaccttggaaacttacaggaactcggctgag
tcgtacgacgtccaggagggcagcaagtcggacctcctgaacgcccgtgtctctggagag
attctgtccctggccctgatcaggtaccagggccgagactggcagggacacctccggatc
cagcaggacatgcccgagttcctgtccctgtgtctggtctgcgactcggacgcgagcatg
accctggacctgaacgtccacgtggcgaggacctccggacgcttgctgctgtccctcttc
agcccgtactggatcatcaacaagacctcccgggtcctgcagtaccgggccgaggacttc
agtgtcaagcaccccgcggactaccgggacattgtcctcttctccttcaggaagaagaac
ctcttcagcaagagcaagatccagctctgtgtgtccaccagttcctggtctgatggtttc
tctctggacaccgtggggagttacggctgcgttcgctgtccctccaacaacatggacttc
ttggtgggtgtaaggatccagatgagcaattttaacctgaccaggatcgtcaccatgagt
ccgttctacactctggtcaacaagtcattgtatgagctggaggtgggcgaggtcagcacc
cagacccccacccagacccccatccagacccacacccgctggcactacatctcctctaca
gagtgcctccctctctggcccgacagcagttgtgagaagttgtgtgtccgtgtggtcgga
tctgagtcctcgtccaagtccttcttcttcaaccggcaggacaacggcaccctgctgagc
ctggacacgtgcgggggggtcatggtggacgttaacatctctgacctctcaacaatcatc
agcttcactgattactacgaaggatccgctccagccctgctgctaaaccacaccccctgg
gtttctgtcagctacagacagagcggctcggcggtggatcaccagctgaagcccggtgag
gctcggcggtttgcgtgggacgacccggccggggtccggaccctcagctggacctgcagg
gaccactctggagaactggacctgctaaaggacgaggtgggtcagttctcgtacgacagc
ctgtcccaggtccactgggtgtccttcctcgacggacgccagcgggtgttgttgttcacg
gaggacgttgccgtggtgacgaaggcccggcaggccgaggagctagagcagttccaacag
gaagtcaaggtgtctctgcagcacctgggcctgtccctggtcaacaacgccacacgccag
gagatcgcttacatcggcatccccagttctggggtagtgtgggagatgaagcctaggaac
agatggaagtctttcagtcagaagaacatcgacctgctagagaaaaccttccagagtcag
aagagaggctgggtcacactggagagtaacctggaggtgaacctgagcgacgccatcatg
atgatgcgtcgacccatttcctgtccggtgaggaggaacttcctgtctgggatacaggtg
gagttcaagcagtcaccgcaccaacgctgtctgagagcccagctacactggctgcaggtt
gataaccagttgcccggagcgatcttcccgatcgttttccatccagttcctccaccgaaa
tccatcgcccttgactcagagccgaagccgttcattgatgtgtccgtcatcacccgtttc
aaccgccacagcagcgtcatgcagttcaagtacttcatggctctggttcaggagatggcg
gtgaagatcgatcagggtttcctggcggccatcttggctctgttcaccccggctgctgat
ctgcacaccgaccgacagaagtcgcggctactggagcgagatctgcagctgctgcagacg
gagctgacggaggcgtctctcaccgactcgtcaggactcagcttcttccaacatttccac
atctctcccatcaagctccatctgagcttgtctctgggctccggcggcgatgaggattcg
gcggcggagacggcggcgctgcagtctctcaacctgctgctgaagagcatcggcgccacg
ctgactgacgtcgatgacctcatcttcaaactggcgttctttgaggttcggtaccagttc
taccgcagagacaagctgatgtgggcggtgatccgacactacactgaacagttcctgaag
cagatgtatgtcctggttctgggtctggacgtcctgggaaatcctttcggactcatcaga
ggtctgtcagagggagtggaggccttcttctacgagccgttccagggagctgttcagggt
cccgaggagtttgctgaaggttttgcgattggagtccgcagcctgctgggccacactgtc
ggcggcgctgccggcatggtgtcacggatcaccggctcggtggggaaggggctggcagcc
atcactatggacagagacttccagcagagacggagggaggagatgaaccgcccgccacgc
gacttcggagagagtctggctaaaggaggaaaaggactgctgaagggagtcgtgggcgga
gtcaccggcatcgtcaccaagcctgtggagggagccatgaaggggggggcggctggcttc
tttaaaggcatcgggaagggtctggtgggggtggttgcccggccgaccggcggcatcgtg
gacatggccagcagcaccttccagggcatccagagaggccatgaaagagcggcggagtcg
acagaggaagtgaccaaactgcgtccggtgcgtctgatccgagaagacgggatcatccga
ccctacgacctgacggagtcgcagggcttcgacctcttccagcctgatgaggaattaacg
gatcaacgtgattcattctga
DBGET
integrated database retrieval system
