Etheostoma cragini (Arkansas darter): 117956427
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Entry
117956427 CDS
T07493
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117956427 (vps50)
Membrane trafficking [BR:
ecra04131
]
Protein recycling
Others
EARP complex
117956427 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
117956427
NCBI-ProteinID:
XP_034747366
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Position
14:complement(11049523..11157327)
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AA seq
993 aa
AA seq
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MQKIKSLMTRQGLKSPQESMADLSPVEKLRIPSKEELRELREQPIDPEAEQEIIDSIEEV
YFSNDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLSVAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKQETNSTAGE
VAAAESDESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSHFKYDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
SQLHEFKFMGQCRSPSVSPSKQVASLTSPAQEELSLFQQYIQEGNPFEMQAERKEEETED
VLASNGYESDELEKSVYQDYDSDSDVADELKQDYVDEQTGDVPLKSASRETIRSKKKSDY
NLNKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRN
DMPVPSPSLPSHRGRDGCPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMEAVGE
NAGVHGAAEDRKEKVPSPHLSQMVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLD
TMMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMSGVKWDIREIMSQ
HNVYVDVLLKEFEQFNMRLEEVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSN
EGRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQ
LANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtctcttatgacccggcagggcctgaaaagtccacaggaaagcatg
gcagacctcagtcctgtagagaaactgagaatcccgagcaaggaggagttgcgggagcta
agggagcagcccatcgaccccgaggctgagcaggagatcatcgacagcatcgaggaggtc
tacttctctaacgactccttcgacatggtgcagcacgaactggagaaactaccacctgag
ctgaacctgcaggagctggaagagtacagagacaagctgaaaagacaacaggcagcagtt
tctaaaaaggtcgccgatctcattctggaaaaacagcccgcttatgtcaaggaactggag
cgagtgacggcgttacagaccaacctgcagctggcagcggtcatttgcaccaatgcaagg
aggcaactgagcgtggctaaggagggattcacagaagccagcttgggtctattagccaat
cagaggagacggcaattgttgacaggcctgcttaagtcactcaggaccatcaagacgctg
caaagaaccgatgtaagactcagcgagatgctagaggaggaagactatcccggtgcaatc
cagctctgtctggaatgtcaaaaggccgccagcacctttaaacactacagctgcatcagc
gaattgaattctaaactacaagacactctggagcaaatagaggagcagcttgatgtcgcc
ttgtcgaagacttgtaagcactttgatgtttcccactacaccaaggtccagctggcttac
acgctcctggggaagacacagactgctatggaccagctgcacatgcacttcacccaggcc
atccacaacacggtgttccaagtggtgctgggatatgtggagctatgtgccggaaatgct
gataccaaattccagaagatgcagtacaaagacctgtgcacgcatatcaccccggacagc
tacattccctgcctgacagatctatgcaaggcattgtgggaggtgatgctgagctaccac
cgcaccatgcagtggcacgaagagcatgacaaacaggagaccaattcaactgcaggtgaa
gtagcggcagcagagtctgatgagtctgtggtggaccgcagctatgtgaagaagaagcta
gagcatgggctgacacggatctggcaggacgtccagttgaaagtaaaggcctacatcctg
gggacagacatgtctcacttcaaatatgacgatttcattgtggtacttgatgttatcagc
aggttgatgcaggtgggtgaggagttctgcggcagtaagtcagaggtcctgcaggagtcc
atcaaacgccagagtgtcaactactttaaaaactatcacagggcacgactagaagagctg
aggatgtttctggaaaacgagacctgggaactttgcccggttaagtctaacttcaacatc
tcccagctccatgagtttaaattcatgggccagtgtcgttctccgtccgtttccccaagc
aaacaggttgcgtccttgaccagcccggctcaggaggagctgtctctgttccagcagtac
attcaagaaggaaacccctttgagatgcaggctgagcgcaaagaggaggagacagaggat
gtgttggcatctaatgggtacgagtcagacgagctggagaagagtgtgtatcaagattac
gacagcgacagcgatgtcgctgacgagctcaagcaggactacgttgacgagcagacgggt
gatgttccactcaagagtgcgtcccgagagaccataagaagcaagaaaaagtctgactac
aacctcaataagaccaatgcaccgattctcaccaacaccaccctcaacgtcattcggctt
gttggcaagtatatgcagatgatgaacattctgaagccgatcgcctttgatgtcatccac
tgtgtgtcacagctctttgactactacctgtatgctgtatacaccttctttggtcgcaat
gacatgcctgtccctagcccgtctttgccatctcacaggggcagagatgggtgccctgcc
agggtggtgggccctgcttgcttgtatgagtcatcgggcctgggccttatcagcagcaga
ctgagaactacactgaaccggatccaggagagcctcattgacatggaggcagtgggagaa
aatgctggagtccacggcgcagcagaggacagaaaggagaaggtgcccagcccccatctc
agccaaatggtggtcctcactaacagtgggactctttatgggctagcacagagggtggtg
gccactgagtctcttgtgtttctggcggaacagtttgaatccctccagtcccacctggac
accatgatgcctgcagccaagaagcccttcctgcaacagttttattcccagacggtgtcg
accgccagtgaacttcggaaaccaatttactggattgttgcggccaaggccatcgattac
gagcaaatgttgctcctgatgtctggagttaaatgggacattagggagataatgtcacag
cataatgtatatgtggacgtcctgttaaaggagtttgagcaattcaacatgcgactggag
gaagtttccagacatgtgcgcatcccgctgcctgtgtccaacgtcctgtgggagcactgc
atccgcctagccaacaggactctagtagaaggctatgctaatgtaaagaaatgcagcaac
gagggccgggccctgatgcagctggactttcaacagttcctcatgaagctggagaagctg
accgacctgcgacccatccctgataaagaatttgttgagacctacatcaaggcctattac
ctgacagagaatgacatggagcagttcattaagaaccacagggagtactccatgaagcag
ctagccaacttggtgaacgtttgtctgggttcacatataaacaagaaggctcgtcagaaa
ctcctggcagccatagatgacattgacagacccaagagatag
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