Etheostoma cragini (Arkansas darter): 117956564
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Entry
117956564 CDS
T07493
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117956564 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117956564 (parn)
Enzymes [BR:
ecra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117956564 (parn)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117956564 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
117956564
NCBI-ProteinID:
XP_034747570
LinkDB
All DBs
Position
2:25581693..25590610
Genome browser
AA seq
675 aa
AA seq
DB search
MEVTRQNYKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTKSKYITKSFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSKGPAHVPEEHKDY
INRVIEKVEALFTNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQV
SKVDDEERKRREQQKQEREQEELNDAVGFSRVIHAITKSAKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEITMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQVE
TAEGFPGYDTAQGQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISAHSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLNQTPKSWGEDGWMKPHHT
SATCAGFGYPRGLRKRSISPAQGDQGTGDASVTDGWSHCLYPDSTGSKKMKTDDKSGQAI
ESKTSEGWLKTADASDSAGSSPVPDEVEEQSPEGNDAEGTVPWQQATTVHRKKGQKKKAK
GAKSTTSLFEVPEVW
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattataaagacagtttaaacacggtgtacagcgccatagag
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcccaatgtc
agtgcactcaccaacggactggacacaccagaagagcgatacacgaagcttaaaaagcac
tcaatggactttctgctgttccagtttggattatgtacattcacgtacgaccagacgaag
tcaaagtatatcacaaagtcttttaatttttatgtattcccgaaaccgttcaacaggaca
tctcctgacttaaagttcatctgtcaaagttccagtattgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtcatggaatcccatatctaaaccaagaagaagaagcc
cagctgagggagcagacagaggagaggagaaatcaacatgctaacggtgtagggacacca
tcctacatctccccctcctccaaaggccctgcacatgtacctgaggagcataaagactac
atcaacagggtgatagagaaggttgaggccctcttcactaactctgagaagactttggac
ttggacccatgtaccgggtttcagagaaagctgatctaccagacactgaactggaagttt
cccaaggggcttcatgtggaaactgtggaaacggaaaagaaggagcgatacatccaggtc
agcaaagtagatgatgaagagaggaagaggagggaacaacagaaacaagagagagagcag
gaggagctaaatgatgctgttggcttctccagggtcatccacgccatcaccaaatctgcc
aaacttgtggttggtcataacatgctgttggatgtgatgcacaccatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagagatcacaatgtgtgtcttcccaaga
attctggacacaaagttgatggcttccactcagccctttaaggagctgatcactaacacg
tctctggcagagttggagaaacagctgaaagagagccctttcaaatcaccacaagttgaa
acggcagaggggttccccggttatgacacagcccagggacagctccatgaggccgggtac
gatgcatacatcactggcctctgtttcatctcgatggccaactacctgggctctttcttg
actccacccaaagcgtacatctctgctcactcaaaactaattgagcctttcttcaacaag
cttttcctgatgaggatcatagatattccctacctcaacatcacaggaccagatttgcaa
cctaaaagagaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgacctc
taccagctctttagtgcctttggaaacatccaggtttcctggatagacgacacgtcagca
tttgtgtccctaagtcagacggaccaggtacagatcgctatgaacaccagccgctatgca
gagagttacaggatccagacgtatgcggagtacatccagggtaagcagcaggacaaggag
aagctcaaccagacgcccaaatcttggggagaggatggctggatgaaacctcaccacacc
tccgctacttgtgctggttttggatatcccaggggtttgaggaaacgcagcatcagtccc
gctcagggagatcaggggaccggagatgcttcagtcacagatggctggagtcactgcttg
tacccggatagcacaggcagcaagaagatgaaaactgatgacaaaagtgggcaagctatt
gagagcaagacctcagaaggatggctaaagactgcagatgcatcggattcagcggggtct
agtccagtccctgatgaggtggaagagcaaagtcctgaaggcaatgatgctgaggggacg
gtaccttggcaacaagccacaacagtccataggaagaaaggtcaaaagaaaaaggccaaa
ggggctaaatctacaacgtcgctgtttgaggtcccggaagtctggtag
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