Etheostoma cragini (Arkansas darter): 117956666
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Entry
117956666 CDS
T07493
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117956666 (cica)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117956666 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117956666
NCBI-ProteinID:
XP_034747748
LinkDB
All DBs
Position
14:complement(20935566..20972712)
Genome browser
AA seq
2545 aa
AA seq
DB search
MKPIKKQRRSPPSTRAKGGKRRGAGDAPEGGEKRDSDENRDRSRSPLNRTPSSSFSSNSH
SESSQMEPIRARDTSEVEGLHREGLSERTVSLVMDSGKFLDDRPGRLAVSGSSHSDSGGS
SCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCMSATGNHSNPSSSTPPPLPLS
GGVINHGSTGSGSDIYVLHPDGNSQSRSLMDDFHSRNTGREGPQNGSSGPPTLSLEGDRE
RPGGGEGVRDAEGVLPSPLPRCSSTDTASEHSADLEVVGDPHTLTQMSTHAPPSLPDALS
DALAKGLKNQRVLARQLRRKSDEEGGGERRDEGGISELVFRTGVVRKVSGDFGSLEVQLN
GEKTLCRYPYRHDSPPGVVDIILDAPPPGVHPIAIGTRVCVPFGNEEGSEGQWYRQGVVT
QVDTHPAVANRYRVLLSEERQEVDEEEDGRGTAAGTQAVWVSRQTLRLLVPPWDLDLPSG
GGRDGEDRVRDKEREREDREEIDVEQEVCRLSCGMTPGVGTVLGRGIPYPGMVPVSSTSG
QNITSPVTPASVLSLAPGREWEIEKDLERERDLQRIQERERERERERENSAMQQHQQQQQ
QQQQQQQQHHQYMPLTPEEDMEVSHFNMLPVGAIIPGAKPMALSQHRHIVSKPPPGYLNP
HLSVVRGIGIPGIPPTHLALKPHPPPSPVLLSLDPATAAAAAAGAVITTSQLPPLPPISS
STASSSRVEKASGGGSSSGGAGGGGGSGSGSTSSSSSRSRTPLTAAQQKYKKGDVVCTPT
GIRKKFNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGSRERGGASSTGTLT
PSDLRLSGGRASSEFDWDETSRESSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAAT
MLVSLGSSRSGTPSYSPISNQSPFSPTPSPSPSPLFGFRPTNFSPITAPASLTPRRHRQL
SGTKMGTPGVERERHLSGIVPTFQTNLTFTVPMSPSKRKLDNHPPPPLPAIQDYQTKPEQ
QQLVSIGGGLDPNLGHNNAAFRVLSPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPML
VSPTPPSPLPQEPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLGRRERSRSREHSQPQHT
APPGLQVPVPINGATTNGAVLLRNPTSTLVLVTSNSSLTPATVGHAALSSPSMVPTSSGL
ILSSSGSGGRERERKPEGHQDASGGGLPQPVACHPTPTALLPLILPAESPHPAPRKQIIM
GRPGTVWTNVEPRSVPVFPWHSLVPFLEPSQSGAAAQPSDGQQLVNQSKEPLCGVALVSD
GRTGPPDLERGSPSCPPPTNDNPPTDRGGADSETESDIDDPFSPGVANDPTPSDGPMKRR
TQSLSALPKDGDRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA
LGPNEKQQYHDLAFQVKEAHFRAHPDWKWCNKDRRKTLSEGRGTPKEPRERSMSESIDAH
PESQVLEGKGGGSGWPGGSERQGGLFVGQHPRPRAFSQSAVHTLEQRERERDLEKEDRAG
LFRHRPTPQSLYQGGAGEDVTSDDERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSD
EDEPDGQHGFQPMTRSSLPPSPPSIPHSNSTSAKGNGVGGGGEEGSERKKKRGTDGGEEG
SEGRSKREETAGIGEEGGGVGVSSLSITGSTSSTQAPLVLAPQGLTPVGGAVRVAPTVAT
NVVRPIVCTPVPIASKPVEGAITLSSLPQDKKATLLIGGGGPQQLPITAGGGYLSSSSSP
GPVSVTPVGRSGLVTSLVLGGSFPAVQPVQLLNPQPHSQTPLPVLQPQLHPTAAMSSLTP
LGCPKPLAQVQYVLPAESPSSPQLTQQQILSLPSNAALANGMHSGAGIRVASVSPGTRVR
TGSTPPHPSISLVAPPLPVQNGPATGNKIIQIAPMPVVQTKVHPSGAAAVHPGSPFPVSV
ATVMAPGVAPPQTVLLTSPPTRITYVQSGPGVTTATPQQATPAPGPAYLPSSLATLGFTA
IAPVGQNLVQPIVGPPPLLATAPSLSCQPQTPQGQASGTAGRQVLTAIYPAPTVTLPTGV
VSVTTCDAVPPAMAAPVQDPRNPPSPSAMGVQGSAGTTPQPNEAGEVELKVEVKKEILTD
GQTEEGGQGWLNCAASSSLATCMINVTEVKKEEDGGLYIKEENPRDGYSREKGSDTDREQ
ERGNKENSERKGGRETHREDHSMGDSSKEAGPRTPPPPPSGLDPPPPPPAEREPPSSSKK
TKFRPPPLKKTPDSLEKQQESGGEATEKRKPWQNSALRVLSETYFEERFAELPEFNPEDV
LPSPTLQSLATSPRAILGSYRRKRRNSSELELTAEEPSSPRRKTRCLSSCSSEPNTPKSA
AKCEGEIFTFDKAGTEGEDLLGDLDRVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATA
AFQARYSDTFPTKVCLQLKIREVRQKIMQTATPGTFEPGVLGGLAEANPAPSHSSSFNQS
AREDGGLEQQGDKGRSPEEPKSEGS
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgataaaaaagcagcggcgctctcctccctccacccgggccaaaggggggaag
cgtcgcggagcgggggatgccccagaaggaggggagaagagagactcagatgagaacaga
gacagaagcagatccccactaaaccgaacaccctcgtcttcattttcttctaattcacat
tcagagtcctcccagatggaaccaatcagagcacgggacacttcagaggtggaggggctt
cacagagaaggactgtcagaaaggacggtgtcacttgtgatggattctgggaaatttttg
gatgatagaccagggaggttagcggtgagcggcagcagccacagtgacagtggtggtagc
agttgtagtaacagtagtacaccaagcgccaacaacagcccaaaccccgcctccagccga
aaaacagccaccttcaaggcccgtgttcccaaaaagaaatacacctctgaacactgcatg
tctgctactggtaaccatagcaatccttcctccagcacgccccctcctctacctcttagt
ggtggggtcatcaaccacgggtcaacaggttcaggaagtgacatctatgtcttgcaccct
gatggcaacagtcagagcaggagcctgatggacgacttccacagcaggaacactggcagg
gaagggcctcagaatggctcctcaggaccccctaccctgtcattggaaggggacagggaa
agacctggagggggtgaaggggtgagagatgcagagggagtgttgcccagtcccctgcct
cgctgctcctcaacagacaccgccagcgagcactcggctgacttagaggttgtcggcgat
ccacacaccctcacacagatgtcgacacacgcaccgcccagtctcccagatgccctgtct
gatgcccttgccaaagggctgaaaaatcagcgtgtccttgcccgccagctcaggagaaaa
agtgacgaggagggagggggcgaaaggagggatgaaggggggatttcagagttggtgttc
cggactggagtcgtccgcaaggtcagcggtgattttggaagcctggaggtgcagctgaat
ggtgagaagacgctgtgccgttacccgtatcgacatgacagccccccaggggtggtggac
attatcctagatgccccacctcctggtgtccatccaatagctattggcacccgtgtctgt
gtaccatttggtaatgaggagggcagcgaaggccagtggtatcgacaaggtgtggtgact
caggttgacacacatcctgcagtggccaaccgctaccgcgtcctcctgtctgaggaaaga
caggaagtggacgaggaagaggatggcagagggacagctgctggtacccaggcagtgtgg
gtctctcgacaaacactccggcttctggtgccaccttgggacctggatctcccgtctgga
ggaggacgagatggagaagatagagtgagagacaaggaaagggagcgggaggatagggag
gagatagacgtggagcaagaggtgtgtcgtttgagctgtgggatgacacccggcgtgggg
acagtgttggggagaggaatcccctacccaggaatggttcctgtttcctccacctcagga
caaaatattacctccccagtaacaccagcatcagtcctcagcctggccccaggccgagag
tgggaaattgagaaagacttagagagggagagggacctccagagaatacaggaaagagag
agggaaagagagcgagaacgggagaacagtgcaatgcagcagcaccaacaacaacaacaa
caacaacaacagcagcagcagcaacaccaccagtacatgccactcacccccgaagaagac
atggaggtgtctcactttaatatgctcccagtgggggccatcatacctggggcaaaacca
atggcactttcccaacatcgccacattgtctctaagcccccgcctggctacctcaatccc
cacttgtctgtggtgcggggaatcggaatccctgggataccccctacccacctggccttg
aaaccccatccccccccttcacctgttcttttaagccttgacccagcaaccgcagcagct
gcagcagctggtgctgtcattaccacctcccagctccctcctctccctcccatctcttct
tctaccgcatcctcctccagagtagagaaggcctcaggaggaggttcttccagtggagga
gcaggtggtggcggtggatccggatcaggttcaacctcctcctcctcgtcacgttcccgc
accccactgacagctgcccagcaaaagtacaagaagggagatgtagtgtgcacgcctaca
ggcatccgtaagaagttcaatgggaagcagtggagaaggctgtgctccagggagggctgc
tctaaagagtcccagcgcagaggatactgctccagacacctctcaatgaggaccaaggag
atggaagccagtggaggcagccgagaacggggtggagccagcagcacagggaccctgacg
ccgtctgacctccgactgagtggtgggagagctagctcagagttcgactgggatgagacg
tcacgtgaaagcagtgaggccagcagccgtggaggagactcacgcccccgcctggtcctt
ccctctctgctcccccaggacctctctcgtttcgactttgatgagtgtgaggcagcgacc
atgctggtctccctggggagctcccgctcaggcacaccctcgtactcccctatctccaac
cagtcgcccttctcccctaccccatcaccctcaccctctccgctctttggctttcgtcct
accaacttcagccccatcactgctcctgcctcacttactccacgccgccatcgccagctt
agcggcactaagatgggtacaccaggtgttgagcgagagcgccacctgtcggggattgtg
cccacttttcagaccaatctcacttttacagtccccatgagcccaagcaagaggaaactc
gacaatcacccgccccctccactgcctgcaatccaggactaccagactaaacctgagcaa
cagcagctggtgagcatagggggagggttggacccaaacctgggccacaataatgccgcc
ttcagagtcctctccccccagagccagcccacaaccccctcctcactttccttcccccga
cctcgtagcgccaccagcaggccaccatcctctgctgcttccacgcctccacccatgctg
gtctctcccactcctccctccccgttgccccaagaaccctccccacgccgtattgtgccc
ttacgtgattccccagtcattgtccgaaacccagatgtccctctggccaagttctctgat
ggtccgttagggaggagagagaggagcaggtccagagagcacagtcagccccaacacaca
gctcccccaggcctgcaggtccctgtccccatcaacggggccaccaccaacggtgcggtt
cttttgcgcaaccccacatccacacttgtcctggtcacctctaactcgtcactgacccca
gccacggtgggccatgctgcattgtccagcccctccatggtgcccacttcatcgggctta
atcctgtcctcctctggttctggaggcagggagcgtgagaggaaacctgagggacaccag
gatgcctccggaggggggctgcctcagccagtagcctgtcaccccacgccaactgccctg
ctgccgctcatactgccagctgagtcgcctcaccctgctccacgcaagcaaatcatcatg
ggacggccagggacggtttggaccaacgtggagcctcggtcggtgccagtgttcccttgg
cattcactcgtccctttcctggagcccagccaatcaggagcggctgcccagccttctgat
ggtcaacagcttgtcaatcaaagcaaagagcccctttgtggcgtggccctggtgagcgac
gggcgaaccggccctccagacctagagaggggatcgccgtcatgccctcccccgactaat
gacaatcctcctacagacagaggaggggctgacagcgagacagagagcgatatagatgac
ccgttctccccaggtgtggccaacgatccgacgccctccgatggccccatgaagagacgc
acacagtccctcagtgccctgcccaaggacggagacaggaagagagagaaggaccacatc
cgccgacccatgaatgcattcatgatcttcagtaaacgccaccgggccctggtgcaccag
cgacatcccaaccaagacaatcggacagtgagcaaaatcctgggggagtggtggtacgct
ctagggcccaacgagaagcagcagtaccacgatctggccttccaggtgaaggaggcccac
ttcagagcgcacccagactggaagtggtgcaacaaggaccgcaggaagacgctgtcagag
ggccgagggacgccaaaggagccacgggagaggagcatgtcagagagcatagatgcccat
ccagagtctcaggtgctggaggggaagggaggaggctcgggctggccagggggatctgag
cgtcaaggggggctgtttgtggggcagcacccccgtccccgagccttttcccagagtgcc
gtgcataccctggagcagagggagagagagagagacttggagaaggaggacagggcgggt
ttgtttcgccaccggcccacgcctcagtccctgtaccagggcggggccggtgaggacgtg
accagcgacgacgagcgcatggtcatctgtgaggaagagggggacgatgatgtcatggag
gattcctgtcctgaaggctccattgacctcaagtgtaaagagagagtgacggacagcgat
gaggatgaaccagatggacagcatggcttccagccaatgactcgctcctctctccctcct
tcccctccctccatccctcactccaactccacctcagctaaagggaacggagtaggaggg
ggtggtgaagaggggtctgagaggaagaaaaagagaggtacagatggaggagaggagggg
agcgagggaagatccaagagagaagaaacagcaggtatcggagaagaaggcggaggagtt
ggtgtctcctctctgtccatcacaggctcaacatccagcacccaggctccccttgttttg
gccccgcagggtttgaccccggttggcggcgcagtccgtgtggcccctactgtggcgact
aatgtagtacgacccatcgtctgcacgcccgtccccattgccagcaagccagttgaaggg
gccatcaccctcagctctctgcctcaggacaagaaagccactctcctgattggaggaggt
ggacctcagcagctgccaatcactgcagggggtgggtacctgtcctcctcctcctcccct
ggtccagtcagtgtaaccccagtggggcgcagcggtctggtcactagcctagttctggga
gggtcctttcccgctgtccaaccagtgcaactcctcaacccgcaaccgcactcacaaacc
cccctacctgtcctccagccacagcttcaccccactgccgccatgtcatctctcacacct
ctcggctgccccaagccgctagcacaggtccagtacgtcctgcctgctgagagcccttcc
tcccctcaactcactcagcagcaaattctctccctgccctccaatgccgccctggccaat
ggcatgcactcaggggcgggaatcagagttgcatcagtcagccccggaaccagagtgaga
acagggtctactcctcctcatccttccatttccctagttgcgccgcctcttcctgtgcag
aacggccccgcgacaggaaacaagatcatccagatcgctcccatgcccgtggtccagacc
aaagttcatcctagtggcgcagcagcagtgcatcctgggagcccctttcctgtttccgtg
gcaacggtgatggctccaggtgtcgcgcccccacagaccgttcttctgacctctccaccc
accaggatcacctatgtccagtctggcccaggagttaccacagcaacgccccaacaggcc
acacccgccccaggccctgcgtatctcccatcatccctggcaaccctgggtttcaccgcc
attgccccggttgggcaaaacctagttcagccgattgttggtccaccaccactgttggct
acagccccgtccctgagctgtcaaccacagacccctcagggtcaggcctcgggaacggct
ggtcgtcaggtactaactgccatctaccccgcaccaaccgttactctgcctactggcgtg
gtctctgtaacaacctgtgacgctgtgccgcctgcaatggccgctccagtccaggacccg
aggaaccctccctctccgtctgcaatgggggtgcagggttcagcgggtacaacccctcag
cctaacgaagcgggggaggtggagcttaaagtggaggtgaagaaggagattctgacggat
ggtcagactgaggaaggagggcaggggtggttgaactgtgctgccagctcctcattggcc
acctgtatgattaatgtcactgaagttaaaaaagaggaggacggcggtctgtacatcaaa
gaagaaaaccccagagatggatacagcagagagaaaggaagcgacacggacagagagcaa
gagagggggaacaaggagaacagtgaaagaaagggaggcagagagacacacagagaggac
cacagcatgggcgacagcagcaaagaggctggacctcgcacccctcctccaccaccctca
ggtttggacccccctccccctcctcctgcggaaagagagcccccctcttcctcaaagaag
accaagttcagacccccaccactcaaaaagacacctgactctctcgaaaaacagcaggag
agtggcggggaagccacagagaagagaaagccctggcagaactcagccctaagggtcttg
tcggagacgtactttgaggagcgttttgctgagcttccagagtttaacccagaggatgtc
cttccttcgcccactctgcagagtctggccacctcaccaagagccattctaggaagctac
cgcaggaagagacgtaactcctccgagctggagctgacagcagaagagccaagctccccg
aggaggaagacccgctgtctctccagctgcagctcggagcccaacacccctaagagcgcc
gccaagtgtgagggagaaatcttcaccttcgacaaagcaggtacagaaggagaggatctg
cttggagatttggaccgggtcccctactcgtctctgcgtagaactctggatcagcggcgg
gccctggtcatgcagctgtttcaggaacatggcttctttccctcagctcaagccactgct
gccttccaggcacgctactcggacacgttccccaccaaggtgtgtctgcagctgaagatc
cgcgaagtccgacagaagatcatgcagacggccacgcccggaaccttcgagcctggagtg
ttaggtgggttggctgaagccaaccccgccccgtcccacagctcctctttcaatcaatca
gcccgggaggacggagggttggagcagcaaggagacaaaggccggagccctgaggagcca
aaaagcgaaggatcataa
DBGET
integrated database retrieval system
