Etheostoma cragini (Arkansas darter): 117956680
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Entry
117956680 CDS
T07493
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117956680 (col1a2)
04518 Integrin signaling
117956680 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117956680 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117956680 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117956680 (col1a2)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117956680 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117956680
NCBI-ProteinID:
XP_034747766
LinkDB
All DBs
Position
14:complement(10875416..10895904)
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AA seq
1352 aa
AA seq
DB search
MLSFVDSRILLLLAVTSYLASCQFSGPRGDKGPRGDRGPKGPNGRDGKPGLPGPAGPPGP
PGLGGNFAAQYDGSKAPDPAPGPPGLVGPRGPPGPPGPPGPQGHTGHPGEPGEPGQTGPL
GARGPPGPPGKSGEDGNNGRPGKPGDRGTPGPQGARGFPGTPGLPGMKGHRGYTGLDGRK
GENGGAGAKGEPGAHGASGSPGLAGARGMSGERGRAGPAGPAGARGADGNVGPAGPAGPL
GAAGPPGFPGGPGPKGEIGPAGATGPTGAQGARGEPGLNGAVGPVGPAGNPGANGLNGAK
GAAGTPGVSGAPGFPGPRGGPGPQGPQGPAGQRGLSGDPGAQGVKGDSGPKGEPGNSGPQ
GPPGPQGEEGKRGPTGELGATGPAGGRGARGSPGSRGMPGSEGRTGPIGMPGARGSTGSP
GPRGPPGDAGRAGESGPAGLRGLPGSPGSSGPPGKEGASGPAGQDGRTGPPGPTGPRGQP
GNIGFPGPKGPSGDAGKPGDKGSTGATGLRGLPGPDGNNGATGPTGPAGGPGEKGEQGPA
GAPGFQGLPGPAGGPGEAGKPGERGIPGDHGVAGIAGSKGERGNPGAAGASGAQGPIGPR
GPAGAPGSDGGKGEPGAAGAAGAAGHQGPGGMPGERGAAGVPGAKGEKGEGGHRGPEGNA
GRDGSRGMPGPAGPPGPTGANGDKGESGGFGPSGPAGARGSPGERGEVGPAGSAGFAGPP
GADGQTGARGERGPAGVKGETGTAGPAGPAGQSGPAGPAGAAGPAGPRGDNGPPGLTGFS
GAAGRVGAAGPAGIVGPPGHAGPAGKDGPRGLRGDPGPAGPSGEQGMVGPPGLSGEKGPS
GESGPPGPSGPPGTSGLLGPQGFVGLPGARGDRGAPGGAGGLGEPGRVGPPGPSGARGPP
GNIGLPGMTGPQGEAGREGSPGNDGPPGRPGNPGFKGDRGEPGPAGSMGLAGTPGPAGPT
GASGRPGNRGEAGPSGPSGPAGAAGARGAAGPAGTRGEKGVAGEKGERGMKGLRGHAGLQ
GMPGPSGPSGDTGSAGPSGSAGPRGPAGPHGPPGKDGRAGSHGTIGSPGARGPPGYVGPA
GPAGAPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATLKSLNTQIENLLTPEG
SRKNPARTCRDIKLSHPDWSSGFYYIDPNQGCINDAIKVFCDFSTRETCIHAHPKSISQK
NWYRSTESKKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKN
SNAYMSEETGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEYRTN
KPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggattctcggattctgttgctgcttgcagtaacttcatacctagcg
tcatgccaattctcgggtcccagaggagacaaaggacctcgaggtgacaggggtcctaag
ggcccaaatggaagagacggcaaacccggactccctggccccgctggcccccctggcccc
cctggactcggaggaaactttgctgctcagtatgatggttcaaaagctcccgatcccgcc
cctggacccccgggtttggtgggccctagaggccctcccggacctcctggaccccctgga
cctcagggacacaccggacaccctggtgagcccggagagcctggacagactggccccctc
ggtgctcgtggcccacctggaccccctggcaaatctggagaggatggtaacaacggccga
cctggtaagcccggagacagaggaacccccggcccacagggcgctcgtggattccccgga
acccctggactcccaggaatgaagggacacagaggttacactggtctggatggacgcaag
ggagagaatggtggtgctggcgctaagggtgagcctggtgcccatggagcttccggaagt
cctggactggctggagctcggggtatgtctggagagagaggccgtgctggccctgctggc
cctgctggtgcccgtggtgctgatggcaacgttggacccgctggccctgctggtcccctt
ggagctgctggtcccccaggtttccccggtggccccggacccaaaggagagattggacct
gctggagctactggcccaactggagctcaaggagcaagaggagagcccggtctcaatggt
gctgttggccccgttggtccagctggtaaccctggtgctaatggtctgaacggagccaag
ggagctgctggcacccctggtgttagtggagctcctggcttccctggaccaagaggagga
cctggaccccagggtcctcagggtcctgctggacagagaggcctttctggagatcctggt
gctcagggtgttaagggagacagcggacccaaaggagagcctggtaactctggacctcag
ggaccccccggacctcagggtgaggagggcaagagaggaccaactggtgagcttggtgcc
actggacctgctggaggccgtggagctagaggatcccccggcagccgtggcatgcctggt
agtgagggaagaactggcccaattggcatgcctggtgcccgtggttccactggttctcct
ggacctcgtggaccccctggagatgctggccgcgccggagaatctggcccagctggtctt
agaggtctcccaggaagccctggaagctccggacccccaggaaaggagggagcctctggc
cccgccggacaagatggccgcactggacctcccggcccaactggaccaagaggccagccc
ggaaacattggtttccccggacccaaaggaccttctggtgatgctggcaagcctggagat
aagggatccactggtgccactggtctgagaggactccctggacctgatggcaacaatgga
gccactggcccaactggacccgctggcggccctggtgagaagggagagcagggacctgct
ggagcccctggcttccagggtctgcctggacccgctggagggcctggagaggctggcaag
cccggagagagaggaatcccaggggaccatggagttgctggaattgctggttccaaggga
gagcgtggtaaccctggtgctgccggagcttctggcgctcagggacctattggaccccgt
ggacccgctggagcccccggaagcgatggtggcaagggagagcctggcgctgctggagct
gccggtgctgctggacaccagggaccaggtggcatgccaggtgagcgtggagctgctggt
gttcctggagcaaagggagagaagggagagggtggacacagaggacctgaaggaaatgct
ggcagagatggtagccgtggtatgcccggacctgccggacctcctggacccactggagct
aatggagataagggtgagagtggtggctttggaccctccggccctgctggagctcgtgga
tcccctggagagcgtggagaggttggccctgctggatctgctggatttgctggaccccct
ggcgctgatggtcagactggagcaagaggagagcgtggacctgctggagtcaagggagaa
actggcaccgctggccctgctggacccgctggacagtctggacctgctggtcctgctggc
gctgctggacctgctggtcctcgtggagacaacggcccacctggtctgactggtttctct
ggtgctgctggcagagttggtgcagctggtcccgctggtattgttggaccccctggccat
gctggtcccgctggtaaggatggtcctcgtggtctccgtggtgatcccggtcccgctggt
ccttctggagagcagggcatggttggaccacctggtctatctggagagaaaggaccctct
ggagagtctggtcccccaggtcctagtggtccccctggaaccagtggtcttcttggacct
cagggattcgttggtctgcccggtgctagaggagatcgtggtgcacctggtggagctggt
ggtttgggagagcctggtagagttggacctcctggtccctctggagcccgtggtccccct
ggcaacattggcctgcctggcatgactggacctcagggagaggctggacgtgagggcagc
cccggtaacgatggaccccctggccgtcctggtaatcctggattcaagggagaccgtggt
gagcctggacctgctggttccatgggacttgctggtacccccggacccgctggacccact
ggagcttcgggcagacctggaaaccgtggagaggctggcccatctggtccctctggaccc
gctggcgccgctggagctagaggtgccgctggacctgctggaacccgtggtgagaaggga
gttgctggagaaaaaggagagagaggcatgaagggtctgcgtggacatgctggtctccag
ggaatgcccggaccttctggaccatctggtgacactggatctgctggaccaagtggatct
gctggacccagaggacctgctggaccccacggaccccctggtaaggatggcagagctggc
agccatggtactattggctctcctggtgctcgtggtccccctggatacgtcggacctgct
ggtcctgctggagctcccggtctgcctggacctcccggccctgctggtggtggatatgat
gtctctggatatgatgagtacagagctgatcagcccgccctgagagccaaggactacgag
gttgatgccacccttaagtcccttaacactcagattgagaacctgctcacccctgaggga
tccaggaagaaccctgcccgcacctgccgtgacatcaagctcagccaccccgactggagc
agcggattctactatattgaccccaaccagggatgcatcaatgatgccatcaaggtgttc
tgtgacttctccacccgcgagacctgcatccatgcccaccccaagagcatctcccagaag
aactggtacagaagcaccgagagcaagaagcacgtctggtttggagagaccatcaacggt
ggtactgagtttacctacaacgatgagacactcagcccacagagcatggccacccaactt
gccttcatgcgcctgctgtccaaccaggctagccagaacatcacctaccattgcaagaac
agcaacgcctacatgagtgaggagaccggtaacctgaagaaggctgtggtgctccagggc
tccaatgatgtagagcttagagccgagggcaacagccgcttcaccttctccgtgctggag
gacggctgcactagacatactggtgaatggagcaagacagtgattgagtacagaacgaat
aaaccatctcgcctgcccatcctcgacattgcacctttggacattggtggagctgatcag
gagtttggtttggacattggcccagtctgtttcaaataa
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