Etheostoma cragini (Arkansas darter): 117956809
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Entry
117956809 CDS
T07493
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117956809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117956809
03036 Chromosome and associated proteins [BR:
ecra03036
]
117956809
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117956809
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117956809
mRNA degradation factors
5'-3' decay
Decapping complex
117956809
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117956809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117956809
NCBI-ProteinID:
XP_034747968
LinkDB
All DBs
Position
14:complement(19634066..19644056)
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AA seq
489 aa
AA seq
DB search
MATARTENIGPVVMGLNKQNGQLRGQTKPASVQQAPTTQGKTLGAPQVAGGAAQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHASGADCDVEEIEE
TPGRQQDTT
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaacattggcccagttgtcatgggactgaacaagcagaat
gggcaactcagaggacagactaaaccagcgtcggtccagcaagcacccacaactcaagga
aagactttgggtgcaccccaggtagcgggtggtgctgctcaggacggaggaggcatcaag
tttggagatgactggaaaaagagcctgaagctccctcccaaagacaacagggtcaaaact
tcagatgtgacgtccactaaggggaatgagtttgaagattactgtcttaagagagaactc
ctgatgggcatctttgagatgggttgggagaagccttcccctatccaggaggagagcatt
cctattgctctgtctggacgggatattcttgctcgggctaagaatggaacagggaaaagt
ggagcctatctcattccactgctagagagaatagacttgaaaaaggaccatatacaggca
cttgtcatggtgcccacccgtgagctcgcactgcaggtaagccagatctccatccagatc
agcaaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgcctggatgagactgtgcatgtggttattgccacacctggtaggatcctg
gacttgataaagaagggagtggcaaaagtggacagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaaaaacaggcagattctgctctactctgcaaccttccccatcagcgtacaaaagttc
atggccaagcaccttcagaaaccctatgagataaacttgatggaggagcttactctgaag
ggcattactcaatactacgcctacgtcacagagaggcaaaaagtccactgcctcaacaca
ctgttctccaggcttcaaatcaaccagtcgattatcttctgtaactccactcagagggtg
gagcttttggccaagaagatcactcagctgggctattcttgcttctacatccatgctaaa
atgatgcaggaatacagaaacagagtgttccatgacttcagaaacggactgtgcagaaac
ctggtctgcactgatctcttcaccaggggtattgacatccaggctgtaaatgtagtcatc
aactttgacttcccgaaaaatgcagagacttacctccatcgtattggaagatcagggagg
tttggtcaccttggcttggccatcaacctgatcacatcggaggaccgcttcaacctgaag
gccatagaagaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccacgcgtccggcgctgactgtgatgtggaggagattgaggag
acacctggacgccaacaggacaccacctaa
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