Etheostoma cragini (Arkansas darter): 117956941
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Entry
117956941 CDS
T07493
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117956941 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117956941 (snrnp40)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117956941 (snrnp40)
Complex C
U5 SnRNP specific factors
117956941 (snrnp40)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
eIF2A
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_IFT140_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
117956941
NCBI-ProteinID:
XP_034748227
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All DBs
Position
14:complement(12372035..12380103)
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AA seq
347 aa
AA seq
DB search
MIEPKKRVADTAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNYATMKGHSGAVMELHYNTDGSLLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAATFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacctaagaagagagtggcggacacggcggttgttccaaccgcggtgaagcgg
ccccggacggagcttgtggcggcggctcagtctcagcaactcgtggccatgggtcccccg
cggagctccagcctgcaggctcccattatgctgatgtctggccacgagggcgaggtctat
tgctgcaagtttcaccccaatggagccacgctggcttcctcaggatttgacaggctcatt
ttgatgtggaatgtgtatggagattgtgacaattatgccactatgaagggccatagtgga
gcagtgatggagttgcactacaacacagatggcagcttgctgttttcggcgagcacagac
aagactgtaggtgtttgggacagtgaaacaggcgagaggatcaagcgtctgaagggccac
acctccttcgttaacacctgctacccagcccgccgagggccccaactcgtctgcaccggc
agtgatgacgggacagtcaagctttgggacattcggaagaaaggggcgatccacactttc
cagaacacctaccaggtgctggccgcaacattcaatgacaccagcgatcagatcctgtca
ggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaacaaactgatctacaat
atgcacggccacggggactcagtaactggactcagtctgagctctgagggatcatacctt
ctctcaaactccatggacaacacagtgcgtatttgggatgttcgaccatttgcacccaag
gagagatgtgtgaagattttccagggcaacgttcacaactttgaaaagaatttgctgagg
tgctcctggtctacggacggcagtaagatagcggccggctcagctgacagatttgtgtat
atctgggacaccacatcacgtagaatcctgtacaagctgccgggccacgccggctcagtc
aacgaagtggcatttcatccagaggagcctatagtgctgtctggctccagtgataaaagg
ctctacatgggagaaattcagtag
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