Etheostoma cragini (Arkansas darter): 117957042
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Entry
117957042 CDS
T07493
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117957042 (prdm1b)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117957042 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
STL11_N
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-met
zf-C2HE
Zap1_zf1
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117957042
NCBI-ProteinID:
XP_034748456
LinkDB
All DBs
Position
14:complement(18532848..18544021)
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AA seq
723 aa
AA seq
DB search
MKLESTPGDMSGWRELDFVLNCTYIVPDQVSDPSFSLPKAMTSIPRNLTFEYSTDNEVMG
VFSKEYIPQGTRFGPLQGVIYTKDNVPKHANRKYFWRIYSSGQLQNFIDGYDVHRSNWMR
YVNPAHALAEQNLVACQNGRDIYFYTIRPVEPNQELLVWYSQEFAQRLCSQEVDIKQKYM
SSDEDHESEYTKQHLPQQTWLKESTKEQVKEEKDDDGEENIDVEMLERDTPPDTPDNQIM
DFSRKIEEKSTGDPEDQEIILSPKPKHKEPSLGLNHPYLTHPHSAHSSQHRNLPLHLHGL
YREGVSPYPLYHQSRTLQPNYPLPPYGQHYPRLLLPSYSPPFPGMLPSRGSLRYSSFLGT
DRLPYPPIGTPNLLPVSLPYSPPSQGGLKELKPNVSPPRGAPATPELSPIPKPDSQHQST
EQSLSGCEEAMNLSLATTKSNPATRNSPGHKSLPYPLQKQNGKIKYECNICSKTFGQLSN
LKVHLRVHSGERPFHCNLCKKSFTQLAHLQKHHLVHTGEKPHECQVCHKRFSSTSNLKTH
LRLHSGEKPYQCKLCSTKFTQYIHLKLHRRLHSSRDRPYRCQLCAQAFFHRFSLRIHQCS
CCMANSNAPVNVHMKQMVERFDASQEADMLTEAASTLQVEEAIEHWLARTLEGEGKKDQK
EAAILLKALTAAINAPAMPMTASAIATSHHSPPLTYQERASVVHLHQRPTVKTEDSEKKG
GVI
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaaagcacaccaggagacatgagcgggtggagggagttggactttgtcctc
aactgcacatacattgtgccagaccaggtgtcagaccccagcttcagtctgcccaaagcc
atgacctccattccacgcaacctcacctttgaatacagcacagacaatgaggtgatgggc
gtgttcagcaaagaatatatccctcagggtactcgctttggccctttgcaaggggtcatc
tacaccaaagacaacgtacccaaacatgccaacaggaaatacttctggaggatttacagc
agtgggcagcttcaaaacttcattgatggctatgacgtccacaggagcaactggatgcgt
tacgtcaacccggcccacgctctggctgaacagaacctggtggcttgccagaacggacgg
gacatctacttctataccatccgacccgtggagcccaatcaggagctgctggtttggtac
agtcaggagtttgcccagaggctctgcagccaggaggtcgacatcaaacagaaatacatg
agttctgatgaagaccacgagtcggagtacaccaaacagcacctacctcagcagacatgg
cttaaagaaagcacaaaagaacaggtgaaagaagagaaggatgatgatggagaggagaat
atcgatgtagagatgttagaaagagacactccgcctgacacacccgacaaccagatcatg
gacttcagcagaaagattgaggagaagagcaccggagatccagaagaccaggagatcatt
ctgtcccctaagcccaaacacaaagagcctagcctgggcttaaatcacccgtacttaaca
catccccattctgcacactcatctcagcaccgaaatctccctctccacctccacggcctc
tacagggaaggcgtttcaccttaccccctttaccaccaatccagaaccctccagcccaat
tacccacttcctccctacggtcaacactatcctcgcctcctccttccttcatattcccct
ccctttcctgggatgctgccttcaagaggatcgctccgatacagcagcttcctgggcaca
gacagactcccgtatccacccatcgggacaccaaatcttctgccagtgtctctcccctac
tctccaccttcacagggaggtctgaaagaactgaaaccaaatgtgtcgccaccacgaggc
gccccggccaccccagagctctccccgatccccaagcccgacagtcagcatcagtctact
gagcagtctctctctggttgtgaagaagctatgaatctcagcctggctacgaccaaaagc
aacccagcgacacgcaacagccctggccacaaatccctgccctacccactgcagaaacag
aatggaaagatcaagtatgaatgtaatatctgctctaagacttttggacagctgtcaaac
ctcaaggtccatctccgagtgcacagtggtgagagaccgttccattgtaacctatgtaaa
aagagcttcactcagctggcccacctccagaaacatcacctagtccacacgggggagaag
ccacatgaatgtcaagtgtgtcacaaacgcttcagtagcaccagcaacttgaaaacacac
ctacgcctccactctggggaaaagccttaccagtgcaagctgtgtagcactaagttcacc
cagtacattcaccttaaactgcaccgtcgtctccacagcagccgcgaccggccctaccgc
tgccagctctgcgcccaggccttcttccaccgcttctcccttcgcatccaccagtgcagc
tgctgcatggctaactccaatgcacctgtcaacgtacacatgaaacagatggtggagcgg
tttgacgccagccaagaggctgacatgcttacagaggcggcatcaacactgcaggtggag
gaagcgatagagcactggttggctcgtaccttggaaggcgaggggaagaaggaccagaag
gaggccgccatactgctgaaagctctgactgcagctattaacgcacctgcaatgcccatg
accgcatcagctatagctacatcacaccacagccctccactgacctatcaggagagggcc
agcgttgtccatctccaccaacggccaacagtaaagacagaagacagtgagaagaaaggg
ggggtaatataa
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